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Clone Read LE_HBa0006N09_SP6_2944

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0006N09_SP6_2944
Primer
SP6
ID from Seq. Facility
LE_HBa_006_N09-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
826 trimmed for vector and quality, 994 raw
Genbank Accession
DU023105
Sequence
>LE_HBa0006N09_SP6_2944 (raw untrimmed)
AAAAAAAAAATGGTTTCNGCCGGCTATTGANAGGACATTGATAGAAAGTTGCTTCAACATTGTTATAAAACGCCGATATTTGCCATCCTCGGTCTTTTTC
AATAATCTTTGAGGAAATGGAGGTGGTGGCCTAGGCATAGGAGTTACCTTTTTAGGAACCTCAGCATCTTTTGCAGTGTTATCCTCTAATTCAGCATCAA
CATTTACCACTTTATCAGTATCTTTTGTCACCTTATTCTCATTAGATGGCCTAGGTGGGTCAATGGTTTGCTTGCCACTGCGAGTAGTAATTGCCATACA
ATGTCCATCATTTTTCAGATTTTGGACAGTGTTGCTGGGAAGAGTGCCCGGTTGCCGTGTGTTCACGGTTGCAGATAATTAGGCCAATTGTAACTCAAGT
TGCTTAATTGATATTACATGTGTATCAACTTTTTTCCCAATACCCGCTAAATCATTCCTCAACTCTTTATTGTGCTCATCACTAGCATCGAACCTCCTCA
TCATTTTATGCAACATATCCTCAACTCGCGACATACTACCTCCACCATCCCTAGGAGTAACTTCACGATTTTGAGGAGGAACATAGGGTCCATTCCTGTC
GTTTCTATTACCATAGTTACCCCTGTTGAAGTTGTTATCGCGATTGTAGTTTCCATCTCGGACATAATGACCCTCACGATTGTAGTTACCATAGTTCAGA
CCTTGGTTCCCTTGACCTTGGCGCCAATTCTCCTTATTAGAGCCTTAGGCACTTGGTCGGAAATCCCCCATCTGTTCATTTACTGCATAGGAATCCTCCT
CATAATAACACTCATCATTTGGAGGTGGTGGTTTAGCCAAGTAGTTGACTGCATTTATCTTTTCTGCACCCCTAGTGACATGTTTTAGTACCAACCCAAG
CTCAGTTCTCTTCTGAACCCTTCCTTCTCGAATCTATTTGTGGGCTGGTTGTGAGTGGACGGACTGCGAAGTGTTCTTCTTGTACGGACTTCAG
>LE_HBa0006N09_SP6_2944 (trimmed for quality and cloning vector)
ATTGATAGAAAGTTGCTTCAACATTGTTATAAAACGCCGATATTTGCCATCCTCGGTCTTTTTCAATAATCTTTGAGGAAATGGAGGTGGTGGCCTAGGC
ATAGGAGTTACCTTTTTAGGAACCTCAGCATCTTTTGCAGTGTTATCCTCTAATTCAGCATCAACATTTACCACTTTATCAGTATCTTTTGTCACCTTAT
TCTCATTAGATGGCCTAGGTGGGTCAATGGTTTGCTTGCCACTGCGAGTAGTAATTGCCATACAATGTCCATCATTTTTCAGATTTTGGACAGTGTTGCT
GGGAAGAGTGCCCGGTTGCCGTGTGTTCACGGTTGCAGATAATTAGGCCAATTGTAACTCAAGTTGCTTAATTGATATTACATGTGTATCAACTTTTTTC
CCAATACCCGCTAAATCATTCCTCAACTCTTTATTGTGCTCATCACTAGCATCGAACCTCCTCATCATTTTATGCAACATATCCTCAACTCGCGACATAC
TACCTCCACCATCCCTAGGAGTAACTTCACGATTTTGAGGAGGAACATAGGGTCCATTCCTGTCGTTTCTATTACCATAGTTACCCCTGTTGAAGTTGTT
ATCGCGATTGTAGTTTCCATCTCGGACATAATGACCCTCACGATTGTAGTTACCATAGTTCAGACCTTGGTTCCCTTGACCTTGGCGCCAATTCTCCTTA
TTAGAGCCTTAGGCACTTGGTCGGAAATCCCCCATCTGTTCATTTACTGCATAGGAATCCTCCTCATAATAACACTCATCATTTGGAGGTGGTGGTTTAG
CCAAGTAGTTGACTGCATTTATCTTT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.970216
Expected error %
0.156049
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38730.1| Score 155 E Value 1e-36 Identity 14.40% Align. Length 575bp (69.61%) Frame 2
putative reverse transcriptase [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0006N09
Clone
Clone name
hba-6n9
LE_HBa0006N09
C02HBa0006N09
P006N09
Clone type
BAC
Contamination
none
Estimated length
92,893
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found