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Clone Read LE_HBa0006M18_T7_2915

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0006M18_T7_2915
Primer
T7
ID from Seq. Facility
LE_HBa_006_M18-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
829 trimmed for vector and quality, 986 raw
Genbank Accession
DU023082
Sequence
>LE_HBa0006M18_T7_2915 (raw untrimmed)
GGGGCTAGCTGGTTACCGGGGAATCTCTAGAGTCGACCTGCAGGCATGCAAGCTTATGCACATTTTTCGCTAGCTCTCTCAATTCTTTCTCAACATGGGC
GGTACTACCCATAAATAACTTGCTTAAAGCACCAACAACAACATTAGCCTCACATGGGCGATAGAAAATAATCATGTCATAATCCTTGAGTAATTCCAAC
CACCTCCTTTCTCTGACATTAAGCGCTATCTGAGTAAACACATATTGAAGGCTCTTGTGATCGGTGAACGTATCCACATGAACACTATATGGATAATGGC
GTCATATTTTCAAATCAAATATTACAACCGCCAACTCTAAGTCATGGGTTGAGTAATTCTTCTCATGAACTTTCCACTGTCTAGAGGCATAGGTTATAAT
TAACCTTCCTATTCAGCATTAATACACAACCCAAACCAACTCTGGATACATCACAATATACCACAAAACCTTGAGTACTTTCTATAAAGGTCAACACTGG
GCAGTAGTTAACCTCTTAAAGCTTTTCTCACAAGCTTCAAACCATTGAAACTTCACTATTTTCTGAGTCAACTTGGTCAAATTGGACAAAATGAGAACCC
CTCTATGAACCTTCTATAATATCCAGCCAAACCTAAGAAACTCCTAATATCAGCTAGAGATATGGGTCTAGGCTGATTCAGAACTACCTCTATTTTCTGA
TTATCAACTTTAATTCTCTCTCCAGACACAATGTGTGTTAGGATCGAAAATAAGTACGTGTAAATATGGAAGCTAGCAAAGCAAACCTCGAAAGATCACG
AGTAAGAAAATAACGATAAATATATCAAAAGACACAAAGATTTAACGTGGTTCGCTCAATCGACCTACGTCCACAAAGGAGATGAACAATCACTATAAAT
ATGAGAGTACAAATACAGAGGGAAACAACCTCACCCATTCACTCGGAATACATGGGAGGTTACCAAGTGAAACATATCAAGATGTG
>LE_HBa0006M18_T7_2915 (trimmed for quality and cloning vector)
AGCTTATGCACATTTTTCGCTAGCTCTCTCAATTCTTTCTCAACATGGGCGGTACTACCCATAAATAACTTGCTTAAAGCACCAACAACAACATTAGCCT
CACATGGGCGATAGAAAATAATCATGTCATAATCCTTGAGTAATTCCAACCACCTCCTTTCTCTGACATTAAGCGCTATCTGAGTAAACACATATTGAAG
GCTCTTGTGATCGGTGAACGTATCCACATGAACACTATATGGATAATGGCGTCATATTTTCAAATCAAATATTACAACCGCCAACTCTAAGTCATGGGTT
GAGTAATTCTTCTCATGAACTTTCCACTGTCTAGAGGCATAGGTTATAATTAACCTTCCTATTCAGCATTAATACACAACCCAAACCAACTCTGGATACA
TCACAATATACCACAAAACCTTGAGTACTTTCTATAAAGGTCAACACTGGGCAGTAGTTAACCTCTTAAAGCTTTTCTCACAAGCTTCAAACCATTGAAA
CTTCACTATTTTCTGAGTCAACTTGGTCAAATTGGACAAAATGAGAACCCCTCTATGAACCTTCTATAATATCCAGCCAAACCTAAGAAACTCCTAATAT
CAGCTAGAGATATGGGTCTAGGCTGATTCAGAACTACCTCTATTTTCTGATTATCAACTTTAATTCTCTCTCCAGACACAATGTGTGTTAGGATCGAAAA
TAAGTACGTGTAAATATGGAAGCTAGCAAAGCAAACCTCGAAAGATCACGAGTAAGAAAATAACGATAAATATATCAAAAGACACAAAGATTTAACGTGG
TTCGCTCAATCGACCTACGTCCACAAAGG

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.958625
Expected error %
0.160451
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38724.1| Score 199 E Value 2e-66 Identity 61.70% Align. Length 727bp (87.70%) Frame 1
putative retrotransposon protein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38744.1| Score 197 E Value 8e-66 Identity 61.10% Align. Length 727bp (87.70%) Frame 1
putative gag-pol polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0006M18
Clone
Clone name
hba-6m18
LE_HBa0006M18
P006M18
Clone type
BAC
Contamination
none
Estimated length
95,722
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found