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Clone Read LE_HBa0096G13_SP6_29112

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0096G13_SP6_29112
Primer
SP6
ID from Seq. Facility
LE_HBa_096_G13-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
390 trimmed for vector and quality, 766 raw
Sequence
>LE_HBa0096G13_SP6_29112 (raw untrimmed)
ACAAAAAGGAAAAGAATGATAAAATTTGTGTGGGTCCCGGGCCNCTTTCATACTACCACCGATTTTCAAAACAAGTATAAACAATGTCCTTCTACCATGA
TGATCAGGGAATCAAGATTTGTGTGGAAGTCCAGTTCTTGAGGTGCTCCCCAAGATCAGCATCACGGATACAAGCTAGCTCGACCTCATACTCTATGATA
GCATCAATATCTTTGAAAAGGCCCCAGATTCTTTCCCCAAGGCCATCACGATCGGAATATTCTCAAATTGGAAATGATTGGTACTGATGAGGGATCGGCC
TAGCCAATGCTTGATCATCAATCTTCTTCATCTTCATCCAATCCTCCTTCCAGACAAACTTCATCTGCTGGTGAAGGGTAGAAGGGCTAGACCCTTCCAT
AGCCATGTGGATTAACGATCTTCCAAGGTGAAGATTGTAGCTAGAGTCCATGTCGAGGAACTGAAACTTCGCGTCGAATTATGCAGGGACTATCTGATCA
ACTAACTTGGTTATGCTCAAGCTTACTCAAATCAAGCATTATTGCGTTATAGTCATCAACAACAAATATAGAGGCAAATCCATCAACTCCTAGACATCGA
TTAAATCGTTTACATATACTAAAATGAATGTGTATCCTATTGTGCTCTCCCTTCTATCATAGTCGTTTGTATGTTTGATTGTTGGTTAGAAACGTATTAT
CTTTACCTTCTTACATTGTGTGTTCAGAAGATTGTTTGCGATGACTGAATGCGGCGCTGGCTCAAC
>LE_HBa0096G13_SP6_29112 (trimmed for quality and cloning vector)
TTCATACTACCACCGATTTTCAAAACAAGTATAAACAATGTCCTTCTACCATGATGATCAGGGAATCAAGATTTGTGTGGAAGTCCAGTTCTTGAGGTGC
TCCCCAAGATCAGCATCACGGATACAAGCTAGCTCGACCTCATACTCTATGATAGCATCAATATCTTTGAAAAGGCCCCAGATTCTTTCCCCAAGGCCAT
CACGATCGGAATATTCTCAAATTGGAAATGATTGGTACTGATGAGGGATCGGCCTAGCCAATGCTTGATCATCAATCTTCTTCATCTTCATCCAATCCTC
CTTCCAGACAAACTTCATCTGCTGGTGAAGGGTAGAAGGGCTAGACCCTTCCATAGCCATGTGGATTAACGATCTTCCAAGGTGAAGATT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.965827
Expected error %
0.568177
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAU89777.1| Score 93 E Value 3e-18 Identity 19.20% Align. Length 260bp (66.67%) Frame 2
gag-pol polyprotein-like [Solanum tuberosum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0096G13
Clone
Clone name
hba-96g13
LE_HBa0096G13
P096G13
Clone type
BAC
Contamination
none
Estimated length
120,238
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found