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Clone Read LE_HBa0187M04_SP6_278736

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0187M04_SP6_278736
Primer
SP6
ID from Seq. Facility
LE_HBa_187_M04-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
543 trimmed for vector and quality, 952 raw
Sequence
>LE_HBa0187M04_SP6_278736 (raw untrimmed)
NNNNNGGAATCATGTTTTGTATCGTTTGTTAAAGAGGTTAATGGGTGTTTGTGTTTTAGGCCATTTCCTCTTATGCTCGGTGATGGGAAGGCGGTGGATT
TGTGCGAACTGTTCTTGGTTGTGAGGGAGAAGGGTGGGTACGAAAGGGTTTGTGCAAGTCGGTCTTGGGGTGTGGTTGCTGTAGAGTGTGGGTTTGATTT
AACAACTGGTTCGGCTTTGAAGTTGGTGTATGTTAAGTACTTGGATGCATTGAACAGAGCAATGGTGAAACTTGAGCAACCTGATAATGAAAAGAGTGAG
GTTAAGAAGAGTGCTTTGGGTTTTAGTGCTGTTCGGATGGACCTTGAGCTGGATTTGAAGGGGGTTTTGATGGAAATTTGTGATGAAAAAAAGAAAGACG
AAGAACATGGGAAGATGGAGTTTGATCCTGCGGCTGATGGAAATTTGAGCGATCATATTGAGGTTCAGGATTTTGTTGAGAAGCAAAGTTTGGACGGTAG
TGTTTGGGATGTTAAGGGGATTCATGACAATAGGCTAATGAAGTTAAGTGAGGATGAGGACTATTGCATTATTAGGAAGAGGAACTATTATGATGCAAAG
ATACGTGTCAAATTTAATGACAAACATTTGAAGATTCATGATGGAACTGAATATGTTCCAAGGTGGCTTCAAAAACATTGGACCAATCCAAAATTAAACG
TATAACGCAGATACATTCAACCGCAGACGAAAGCAAATTCTAACCCGAACTCCTCACTTAGGTATTCAACTACTCAAATTCAACTTAATTCTCCCTTGAA
AACCTTTCCTTAAATCCATTTGAACCCCTTTTGAAATTCACTACTTGAACAACATACACTTTACAAAAACAAACCCGAGATTCAAAATTCTAATAAAAAT
CCACAATATCTTTCCACTGACAAAGTAAACTTACTTCAAACCCATAACTATT
>LE_HBa0187M04_SP6_278736 (trimmed for quality and cloning vector)
GTTTGTTAAAGAGGTTAATGGGTGTTTGTGTTTTAGGCCATTTCCTCTTATGCTCGGTGATGGGAAGGCGGTGGATTTGTGCGAACTGTTCTTGGTTGTG
AGGGAGAAGGGTGGGTACGAAAGGGTTTGTGCAAGTCGGTCTTGGGGTGTGGTTGCTGTAGAGTGTGGGTTTGATTTAACAACTGGTTCGGCTTTGAAGT
TGGTGTATGTTAAGTACTTGGATGCATTGAACAGAGCAATGGTGAAACTTGAGCAACCTGATAATGAAAAGAGTGAGGTTAAGAAGAGTGCTTTGGGTTT
TAGTGCTGTTCGGATGGACCTTGAGCTGGATTTGAAGGGGGTTTTGATGGAAATTTGTGATGAAAAAAAGAAAGACGAAGAACATGGGAAGATGGAGTTT
GATCCTGCGGCTGATGGAAATTTGAGCGATCATATTGAGGTTCAGGATTTTGTTGAGAAGCAAAGTTTGGACGGTAGTGTTTGGGATGTTAAGGGGATTC
ATGACAATAGGCTAATGAAGTTAAGTGAGGATGAGGACTATTG

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.915769
Expected error %
0.192681
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g46040.1 Score 74 E Value 5e-14 Identity 12.90% Align. Length 347bp (63.90%) Frame 3
68415.m05727 ARID/BRIGHT DNA-binding domain-containing protein / ELM2 domain-containing protein contains Pfam profiles PF01388: ARID/BRIGHT DNA binding domain, PF01448: ELM2 domain
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g11400.1 Score 70 E Value 7e-13 Identity 14.50% Align. Length 248bp (45.67%) Frame 3
68417.m01838 ARID/BRIGHT DNA-binding domain-containing protein / ELM2 domain-containing protein / Myb-like DNA-binding domain-containing protein similar to BRG1-binding protein ELD/OSA1 [Homo sapiens] GI:18568414; contains Pfam profiles PF01388: ARID/BRIGHT DNA binding domain, PF01448: ELM2 domain, PF00249: Myb-like DNA-binding domain
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAC62899.1| Score 74 E Value 2e-12 Identity 12.90% Align. Length 347bp (63.90%) Frame 3
hypothetical protein [Arabidopsis thaliana] pir||A84898 hypothetical protein At2g46040 [imported] - Arabidopsis thaliana
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAO50600.1| Score 74 E Value 2e-12 Identity 12.90% Align. Length 347bp (63.90%) Frame 3
unknown protein [Arabidopsis thaliana] gb|AAO42024.1| unknown protein [Arabidopsis thaliana] ref|NP_182128.2| ARID/BRIGHT DNA-binding domain-containing protein / ELM2 domain-containing protein [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0187M04
Clone
Clone name
hba-187m4
LE_HBa0187M04
P187M04
Clone type
BAC
Contamination
none
Estimated length
107,409
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found