Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

Clone Read LE_HBa0187L16_SP6_278724

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0187L16_SP6_278724
Primer
SP6
ID from Seq. Facility
LE_HBa_187_L16-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
388 trimmed for vector and quality, 994 raw
Sequence
>LE_HBa0187L16_SP6_278724 (raw untrimmed)
TTGGATGGCATTGATCTCAGCTTTCTGATGCGGCTCTTCAGCTGAAGCCTGTGCGGAAAAGATCTTGAATGGTTCACATCACATGAAACCTGGCAATGGC
CCAACTGGAATGCATTGTCCAAAGATTTTATCGATCGATTTGCGTACAACATAAAAATTGTTGCCCACAGACATTCTTTGCTTGGGATGAAGTGAATCTA
ACCCAGAGCTGTGGGATTTGGGGTTTTGAGGAGAGGGGGGAGAAAAGAGCGGCAAGAGTAAGACCACCCATGTCTGAGAAAGAAATCATTGAAGTATTCA
CGCGCGTGAAAACGTTGCTCGTTCGAGCACAGTTTTCCGAGATAGTCAAGATTGGTGAGACTATTGAGGACCGTTTAAAAGCAGGAAAGATAGCCTGTGT
AGCTGCTCCTCGGTCTCCGGTGCTTTGAAAAAAAAAAGAGAAACCTATGTTTCTACGGAAACAACCCCTGATCTGTGTTTCCAAGGGGGAAAACAAAACC
CCTAGAATCTTATCATATTCCCAAGGTCGTTCTCGACCCTCCCCAAAAGTCCTACCAATCTTGCTACCGCAAGCCATATTCCAAATCCCCATTCCAATGG
ACCCCCTTTCCAATCCACTCCCTTACCAAAACCCCTCCCCCCAAAAAACCTCTTCAATAACAAATGCCCCCCCCACTTTCCCGGGTGGGGTTCGATTTAA
CCAAATCATCCTCCCCCCCACCTAATCACATTTCCCTACCAGGGTGCCGCTCCCAACTGTGGCTAACGGGCGTCACAGCTCTCCGAGGTAATTCCCCTCC
GCGGCCTCTGGGTGATTTATTCACTATTGTCGCTTTGAGCCCCCAGATACTCAGATATTCCTATTTACTACTACCTATGCTACCCAAAATTCTCCCCCCC
CATACAACAAACTACCCCCCCCCCCCCCCTCTGAGCATTCTTGCCCTCCGCATTCTCCACCCCTAGCAAAGATAATCGTGCTTCCTCGGAGCAC
>LE_HBa0187L16_SP6_278724 (trimmed for quality and cloning vector)
CTCAGCTTTCTGATGCGGCTCTTCAGCTGAAGCCTGTGCGGAAAAGATCTTGAATGGTTCACATCACATGAAACCTGGCAATGGCCCAACTGGAATGCAT
TGTCCAAAGATTTTATCGATCGATTTGCGTACAACATAAAAATTGTTGCCCACAGACATTCTTTGCTTGGGATGAAGTGAATCTAACCCAGAGCTGTGGG
ATTTGGGGTTTTGAGGAGAGGGGGGAGAAAAGAGCGGCAAGAGTAAGACCACCCATGTCTGAGAAAGAAATCATTGAAGTATTCACGCGCGTGAAAACGT
TGCTCGTTCGAGCACAGTTTTCCGAGATAGTCAAGATTGGTGAGACTATTGAGGACCGTTTAAAAGCAGGAAAGATAGCCTGTGTAGC

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.975418
Expected error %
2.34706
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAU89777.1| Score 70 E Value 1e-11 Identity 22.00% Align. Length 176bp (45.36%) Frame 1
gag-pol polyprotein-like [Solanum tuberosum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT39964.1| Score 48 E Value 7e-11 Identity 45.30% Align. Length 325bp (83.76%) Frame 2
putative gag polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0187L16
Clone
Clone name
hba-187l16
LE_HBa0187L16
P187L16
Clone type
BAC
Contamination
none
Estimated length
99,052
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found