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Clone Read LE_HBa0092P03_SP6_27220

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0092P03_SP6_27220
Primer
SP6
ID from Seq. Facility
LE_HBa_092_P03-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
667 trimmed for vector and quality, 903 raw
Sequence
>LE_HBa0092P03_SP6_27220 (raw untrimmed)
CCGGTAATGTTTTTTGGCTGGAGTAGACGATGGCATTAGAGACCAACTGTTAATAAGGATTGGGTTCACTGTCGGCTTTTTTCCTATTAAATATTTAGGT
CTACCTCTTTCTCCTACAAAATCGGAAGTTGATGGATTGTCATGCACTCATTGCTGAAATCACTCAAAGGATCACTGTGACTTATTCTAAGCATTTGTCG
TATGTAGGTAGGCTACAAGTGATAAATATTTTCTATACAGAGTTTTTGGGGGGCAATTTTTATCCTTCGACAAAGTGTATTGGAAGAAGTGGACAAAATT
TGTAGAACCTATATATGTGGAGGGTCTGAGGATAAATGAAAGTTTACACTAGTATCACGAGAACAAGTATGCTTTCCAAAGAGGCAAGGAGGATTAAGCA
TTAAAGGTTGTAGTAATTGGAATGCTGCCTCTATCGGACAACTTATTTGGCAACTAATAGTTAACAATGAGTCATTATGGGTAAAATGGGTATTGGAATA
AACTAACTTCTCTCAAGGCACAAATGCATGAACGGTATATTCAAGACACATATCAACTTACAAAGGATGGGAAGTATTCTATTACAATTAGCTACTTGGC
AATCATAGGTCAGAGACCAAAATTGAAGAATGCAGAATTAATATGGAACTCTATGGCCTTTCCTAGGAAAATATTTTTGGTATGGTTGGTTGTAAACTGT
AGGCCTTCTAACATAAGAGAAGAAAATAAGGCTCCAAATTCAAGATGATGGAACCGATTGTTGCCCATTGGATGAACAGTTGAAGAGACTAAATTTCCAC
TTGTTTGAGCCTTGGAAATGGACAAAAAAAAATATGGCCTGGAATATAAGATTTTGAACAGGAGAACGGGTTCTCTATGGAGGGTTACTACAAAAGCCCC
AAA
>LE_HBa0092P03_SP6_27220 (trimmed for quality and cloning vector)
GACGATGGCATTAGAGACCAACTGTTAATAAGGATTGGGTTCACTGTCGGCTTTTTTCCTATTAAATATTTAGGTCTACCTCTTTCTCCTACAAAATCGG
AAGTTGATGGATTGTCATGCACTCATTGCTGAAATCACTCAAAGGATCACTGTGACTTATTCTAAGCATTTGTCGTATGTAGGTAGGCTACAAGTGATAA
ATATTTTCTATACAGAGTTTTTGGGGGGCAATTTTTATCCTTCGACAAAGTGTATTGGAAGAAGTGGACAAAATTTGTAGAACCTATATATGTGGAGGGT
CTGAGGATAAATGAAAGTTTACACTAGTATCACGAGAACAAGTATGCTTTCCAAAGAGGCAAGGAGGATTAAGCATTAAAGGTTGTAGTAATTGGAATGC
TGCCTCTATCGGACAACTTATTTGGCAACTAATAGTTAACAATGAGTCATTATGGGTAAAATGGGTATTGGAATAAACTAACTTCTCTCAAGGCACAAAT
GCATGAACGGTATATTCAAGACACATATCAACTTACAAAGGATGGGAAGTATTCTATTACAATTAGCTACTTGGCAATCATAGGTCAGAGACCAAAATTG
AAGAATGCAGAATTAATATGGAACTCTATGGCCTTTCCTAGGAAAATATTTTTGGTATGGTTGGTTG

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.954757
Expected error %
0.48773
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g11710.1 Score 68 E Value 4e-12 Identity 11.60% Align. Length 266bp (39.88%) Frame 1
68417.m01869 hypothetical protein
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g52065.1 Score 59 E Value 9e-11 Identity 30.30% Align. Length 457bp (68.52%) Frame 2
68418.m06463 hypothetical protein
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
pir||H86435 Score 76 E Value 6e-13 Identity 12.80% Align. Length 272bp (40.78%) Frame 1
protein F17F8.5 [imported] - Arabidopsis thaliana gb|AAF98181.1| F17F8.5 [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAG50886.1| Score 73 E Value 3e-14 Identity 35.20% Align. Length 460bp (68.97%) Frame 2
hypothetical protein [Arabidopsis thaliana] pir||E96556 hypothetical protein F19C24.27 [imported] - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0092P03
Clone
Clone name
hba-92p3
LE_HBa0092P03
P092P03
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found