Clone Read LE_HBa0092L12_T7_27047

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0092L12_T7_27047
Primer
T7
ID from Seq. Facility
LE_HBa_092_L12-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
714 trimmed for vector and quality, 883 raw
Sequence
>LE_HBa0092L12_T7_27047 (raw untrimmed)
GAGTAGCCTGGTCCGGGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTCAAGATCCTATCGAGATATTCCATTTTTGTCAAGACAATTGGAAGA
ACTATGTACTCAAAAGAGTAAAGGTATTATCCGACATTTAACTACTTTTTATACACATCAACAAAATGGTGTAGTTGAAAGAAAATTATCAGATATGAAT
AAATCAACGATGGCACAGACAAATTTGTCTAACTCTTTTTAGGGAGATGCATTATCGAGTGTTACTTACATATCGAACAAAGTTTCTTTTAGATCAACGT
CTTCCACTCCATATGACCATTGGACGGGTCATAAAACAAACCTAAATGATCTACGATCGCGGGCTTGTGAAACATACAATAAAGATTGTTTTGGTGAGTT
TGGTAAACTAAGTTCGAAAGGAAATAAATGCATCTTTATAAGGACCCTGAAAGCTCCAAAGGGAATGTGTTCATCGTTGAACTGGTGGAAGGAAGTATTA
CTGTAATTGTATGAAGAGATGTTAGATTTTTGGAATATGATTTTCCCAAAAAGGGTGAAATAGATGAAGTTGAGCCTTTGTACGAAATGTCAAATTTAGA
AGATTTATTAATGTTGCCTAACAAATTTGATAATTTAGTGGATCAAGAAACGATTTCCTGGTTCAAGTGGGAGTCACAAATCCCAAAATCCTAAAGAGAA
ATCTAAACTTCAAACATGGAGAGTACAAAAAAAGGGTGGCCCTAATCGATCCTTATGGGATTGAGGATCATGTTTTTTTGGGTTCCCCTAAAGAATTCAT
GAACCTAATATACCACTCCCTTCAGCCCCCCTAAAAGTTGAATGGTTCACAGGTTAAACAGCGCATATAGCTAAGAAATACAA
>LE_HBa0092L12_T7_27047 (trimmed for quality and cloning vector)
AGCTTCAAGATCCTATCGAGATATTCCATTTTTGTCAAGACAATTGGAAGAACTATGTACTCAAAAGAGTAAAGGTATTATCCGACATTTAACTACTTTT
TATACACATCAACAAAATGGTGTAGTTGAAAGAAAATTATCAGATATGAATAAATCAACGATGGCACAGACAAATTTGTCTAACTCTTTTTAGGGAGATG
CATTATCGAGTGTTACTTACATATCGAACAAAGTTTCTTTTAGATCAACGTCTTCCACTCCATATGACCATTGGACGGGTCATAAAACAAACCTAAATGA
TCTACGATCGCGGGCTTGTGAAACATACAATAAAGATTGTTTTGGTGAGTTTGGTAAACTAAGTTCGAAAGGAAATAAATGCATCTTTATAAGGACCCTG
AAAGCTCCAAAGGGAATGTGTTCATCGTTGAACTGGTGGAAGGAAGTATTACTGTAATTGTATGAAGAGATGTTAGATTTTTGGAATATGATTTTCCCAA
AAAGGGTGAAATAGATGAAGTTGAGCCTTTGTACGAAATGTCAAATTTAGAAGATTTATTAATGTTGCCTAACAAATTTGATAATTTAGTGGATCAAGAA
ACGATTTCCTGGTTCAAGTGGGAGTCACAAATCCCAAAATCCTAAAGAGAAATCTAAACTTCAAACATGGAGAGTACAAAAAAAGGGTGGCCCTAATCGA
TCCTTATGGGATTG

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.944393
Expected error %
1.16838
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAX92956.1| Score 78 E Value 2e-13 Identity 14.20% Align. Length 350bp (49.02%) Frame 3
retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa (japonica cultivar-group)] gb|AAV85747.1| Integrase core domain, putative [Oryza sativa (japonica cultivar-group)]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAC95173.1| Score 77 E Value 3e-13 Identity 12.60% Align. Length 389bp (54.48%) Frame 3
putative retroelement pol polyprotein [Arabidopsis thaliana] pir||E84473 probable retroelement pol polyprotein [imported] - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0092L12
Clone
Clone name
hba-92l12
LE_HBa0092L12
P092L12
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found