Clone Read LE_HBa0107H18_SP6_267062

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0107H18_SP6_267062
Primer
SP6
ID from Seq. Facility
LE_HBa_107_H18-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
690 trimmed for vector and quality, 843 raw
Genbank Accession
DU084369
Sequence
>LE_HBa0107H18_SP6_267062 (raw untrimmed)
NNNNCCGCTCGCNACAGCTACGACTTATATGCCGGCTGGGTGGTCCGGTAGAGTTTGGGGCCGCCATGGATGCGCTTTTGATGCTGCTGGTCGTGGACGC
TGTGCAACTGGGGACTGTGGTGGTTCACTTTTTTGTAATGGAATTGGTGGTACCCCTCCGGCTACTCTCGCTGAGATTACTCTGGGCAATGAACAGGATT
TCTACGATGTGAGTCTCGTAGATGGCTACAATCTCGCCATCTCTGTAACTCCAGTCAGAGGCAAAGGTGAGAAACATGCCTGATAATATCTAAATGACTC
ATTTGTCCTTGATTAGTTCTTCGATACTTCCTTTTTTTCTTCTACTTTCGTAACAGGGTTACTTTCGTCATTACGTTAATTATTACCCCTTTCCCCTTTC
TTTTCTCGTGTATTAAATCAAACAATATTTATAGCTCCTTCTGTTGATTAAATGATTTTTTCACCTAATTATTGTGAGTTCGATTCCTCGCGTTATAAGT
AGTTGTAGATCTACAGGGATCTAAAATTTGTGGCATTGAGGATTTGCCCTTTGTTTTGACAGGGAAATGCAGCTACGCTGGGTGTGTGAGTGACTTAAAC
ACAATGTGTCCAGCAGGTCTACAAGTTCGTTCCCATGACAAGAGTCACCTAGTGGCTTGCAAAAGTGCTTGTTCAGCTTTCAATTCACCAACATATTGTT
GCACTGCAACTTTTGGTAACCCACAAACTTGCAAGCCAACAGCATACTCAAGGGATTTCAAGACTGCTTGCCCTAAAGCTTATTTCTATGCTTACCACCA
TCCCACTATATTGCCCCCTTGCAAGGGTTAACACCTACGTTCC
>LE_HBa0107H18_SP6_267062 (trimmed for quality and cloning vector)
TATGCCGGCTGGGTGGTCCGGTAGAGTTTGGGGCCGCCATGGATGCGCTTTTGATGCTGCTGGTCGTGGACGCTGTGCAACTGGGGACTGTGGTGGTTCA
CTTTTTTGTAATGGAATTGGTGGTACCCCTCCGGCTACTCTCGCTGAGATTACTCTGGGCAATGAACAGGATTTCTACGATGTGAGTCTCGTAGATGGCT
ACAATCTCGCCATCTCTGTAACTCCAGTCAGAGGCAAAGGTGAGAAACATGCCTGATAATATCTAAATGACTCATTTGTCCTTGATTAGTTCTTCGATAC
TTCCTTTTTTTCTTCTACTTTCGTAACAGGGTTACTTTCGTCATTACGTTAATTATTACCCCTTTCCCCTTTCTTTTCTCGTGTATTAAATCAAACAATA
TTTATAGCTCCTTCTGTTGATTAAATGATTTTTTCACCTAATTATTGTGAGTTCGATTCCTCGCGTTATAAGTAGTTGTAGATCTACAGGGATCTAAAAT
TTGTGGCATTGAGGATTTGCCCTTTGTTTTGACAGGGAAATGCAGCTACGCTGGGTGTGTGAGTGACTTAAACACAATGTGTCCAGCAGGTCTACAAGTT
CGTTCCCATGACAAGAGTCACCTAGTGGCTTGCAAAAGTGCTTGTTCAGCTTTCAATTCACCAACATATTGTTGCACTGCAACTTTTGGT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.972965
Expected error %
0.413143
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g73620.1 Score 143 E Value 1e-34 Identity 75.30% Align. Length 688bp (99.71%) Frame 3
68414.m08523 thaumatin-like protein, putative / pathogenesis-related protein, putative strong similarity to SP|P50699 Thaumatin-like protein precursor {Arabidopsis thaliana}, pathogenesis-related group 5 protein [Brassica rapa] GI:2749943; contains Pfam profile: PF00314 thaumatin family
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g18250.1 Score 141 E Value 4e-34 Identity 76.50% Align. Length 688bp (99.71%) Frame 3
68414.m02276 thaumatin, putative identical to SP|P50699 Thaumatin-like protein precursor {Arabidopsis thaliana}; strong similarity to pathogenesis-related group 5 protein GI:2749943 from [Brassica rapa]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAB95118.1| Score 144 E Value 2e-33 Identity 76.50% Align. Length 688bp (99.71%) Frame 3
pathogenesis-related group 5 protein [Brassica rapa] pir||T14428 thaumatin-like protein - turnip
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAM62907.1| Score 143 E Value 5e-33 Identity 75.30% Align. Length 688bp (99.71%) Frame 3
thaumatin-like protein [Arabidopsis thaliana] dbj|BAC42848.1| putative thaumatin [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0107H18
Clone
Clone name
hba-107h18
LE_HBa0107H18
C03HBa0107H18
P107H18
Clone type
BAC
Contamination
none
Estimated length
106,406
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found