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Clone Read LE_HBa0171N04_SP6_263512

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0171N04_SP6_263512
Primer
SP6
ID from Seq. Facility
LE_HBa_171_N04-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 2852 raw
Sequence
>LE_HBa0171N04_SP6_263512 (raw untrimmed)
CATCGAGCTACATATGATCTGTGGCCACACAGNCTGATCACGTAGTGGTCGAGGATGAGCATCTGTCGTCTGCCACTCGAGACTACTGCGTCTTNACACG
TGCGGCTGNTGACTAGCGTATGGCACTGTAACAAGCCCTGTAGAACACAGCGCGATCGCTACTCAGCNCACTGAGCCGACCGTAATGCTCTCTCGACTGC
TACGACTNCGACAACACANCGCACGTGATNCGCAGATACTTCGCTAAGCTGNCTGCGATGCTCACCGTGCGTACACTCGCANCGACAGTGTAAGCATGCC
ATAGTGTCATCGCTTACCACTAGGACTGTAGTAGTCGCTGCACGCNCGGTACNACTATCTACGNCACCGCANTACTACTCGCATATGTAACCGCACCTCT
TACGATGCTACATCACACCGAAGCTTCCNCACATCTGGCTCTTGACGNGCTATNGCAACGTCANTCGNCGAGTAATCTCTGCACCATCTGTAGCNGATGG
CACACACATCACTCGAAGCAACACTACGGTGNCATACGANGAATAGCACTATNAGCCGTGACTCATGTCTACGCGTGCTTACGGTGGCTCGACGCAGTCT
AGCCGCNGCGTGCGATCATACGTACACTGACACTGTAGATCTGACAAATGATNANAGACTGTGTGACGTATCGCACTGCGAGGCCTTAAACGTGCCTNCG
ACTGATGCGTGCTGCGCGACTTGTGCGACATGGAGCTGTCGTATACTATNGTNACTGCATCATGACGCGATCTGATACACGTNCTTGCGATGTGTGTCNA
GTATNATAGCTACAGTCCGATATATCGCTCGCTNGAGATATCGCACACGTATGCCGCGACAANGACGANACAGCACTAGNANATGAGTGACTGCGATGAT
AGTCCGTACNGACGTTGATACTGANGCACTGTACTGCTNTACTCTCGAGCTAACTGCNACAGTGCATACTATATCAGNCNCGCATNCGCGCGGTGATGCT
CACGATCATATCNATGCGACTNCTTAGATGCATCACGCTGCGAATAACGCCTACGANGTGCNGCAGCGCAGACACGCTCACCGCTGGCGAGCGTATGTGA
TCATGATGATGATCTNCGAACATAATGCGAGTACTACAGCGANCGACGATATNGACTGNGCACCATCGTAGCTACACATACGCAATCNGTCGCGGTCGCT
GACAGCATATGCGATTGTNANCTGCATCAATGAGCTGCACGGTGATNGTNGCCACCGTGTGCGNGACTTGCTGATATGTTCTNACCGGCGACGATNCGNT
CATGACGCGCCACNACTGCCTATACGTACTCATCGCGTCTGACNCGGCAACCTTCGACAGNGTNGNATCTCACGTGTCTGACGTGACTATGTATACTATG
ANGTTGTCGATACTNCGTATNCTCGTGCTGATACTACTGACTTCTGTTCGCGACGTGCACACTTGACTCGCNCAGAACANGATACGACTGCTAGTNCTGA
CGCACCATGATCGTGAACTANCATATACGTCATGTCAGCANGATAACTCAGTATACGNATGACGGCACCTCGCATGACTCAGACGACGACNGTACGCAGC
TGCTGTATANCGTNGACTGCTTGATGCACGCTTGCTACATGTCACGACGAACCGCGCGACTATGATCGTGCTACGTCGCTGAGTCCTCAGTCATCTCTCC
ACTCTAGACGAGCGCTNGATGTGTGCGCACTACTGCCGTACGATANTGTGCGCCGTCTCTGCACGCTATACNACACTGANATAACGCGCACTCGTNCTGC
GANGTCGCGCGGCATCGACACNCTCGCGATTGAGCGTGTGTATGTGTCCCGCTCGCACTAATACATGTCTACGACACTGATAGTGCGANTNGTACGCATC
GCACTAGATATNGCATACNATATAGCGTCGCGCCGATAGTACAGTGAGCGCTGACGTACACTCACATGTGCACGTNGTAGTCAGAGACTGACATACGGAA
TCGCTNATACGCGCTGCACCGNATCTACAGTGACNACCGTGNGCATGCAGACGCGGTCTATACATGCGTACATCGCTAATCCCGACACGATGACGACACC
ANACGTCGTGCTGACTGTGACAGATGCGCCTGTACGATAGATCTGTACGCGTGACGCGACGTGACACGCTGTCGCGCCGATGCGATAGCACTGCATGATN
CTCTCTGCGACCAGCGGACACNATGACGATCGCGTGCAGATACGCACGATACTGAAGCTAACGTGAGCACGCACACGCTGTGAACGTATCAAACTGACGA
CTTNCGTCTGAGAAGCTGACATACTGACCGNGNGNCTCTCTGAGTACTCTGTAGCAAGCGTATANAAACTGNGTACGNACGTCGTGAGTCAGCACGAGAT
ACCGAGACTGTGCACNACGACTGCCGANGATGTACACTGACGAGTGAGTGTCACGGGAATNCGACGNCTATCGCACGATACNGTCGCACTTTNACTACTA
GACGACAGCCACGCTGTACGCTGGCTGACACTACATGAGATCGCTAGATACATTAGTCATGAGGACTATCGTCTCTNGTCTGATACTGACTGTGAGCGCA
TAGTATTGCTCTCGATGAGANCGCGACACTCGGAGANCTANCGCGACCTTNGATCACGTGCAGATGCATACTGACTGACTGATGATGACGCCATGCATCT
GTGTGTGCCGTCGTAGTGTANTACACGATACGCNCATATGCCTGNGTATGTCATGGAGACTACTCTCTNCTGTACTATTACGTCACGCTCGACGTNCNGN
CTCGTNCGGTACATACATTTAAGGTGATACAGCGACTGCTATGACGATCTGN
>LE_HBa0171N04_SP6_263512 (trimmed for quality and cloning vector)
AT

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.9915
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0171N04
Clone
Clone name
hba-171n4
LE_HBa0171N04
P171N04
Clone type
BAC
Contamination
none
Estimated length
93,558
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found