Clone Read LE_HBa0171H10_SP6_263391

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0171H10_SP6_263391
Primer
SP6
ID from Seq. Facility
LE_HBa_171_H10-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
1 trimmed for vector and quality, 1532 raw
Sequence
>LE_HBa0171H10_SP6_263391 (raw untrimmed)
ACTTCCCAGACAATTATTTNNATNANNANTCTACGGTCCTCCATAAGTGACACTGATTACTCCCCATGCGCCCTATATCTGATGTAATTTTAACCGTCTG
ATTATCAATGCGTACTAAGCTCCATGTGCGATAATCGTGCTTGCCGGCTCTAGTTACGCGTTTTTACACGTTATCTGGGGAGGGGGTCACCCCCTTATTT
GACTGTACCCACTCTTGCCTACATTACACTATATTACGAGTAAAACACGAGCTCAGTAACCTCGACATCCTAACATTACGAAGGGAGGGATTCGCATTGC
GTACGTTGCCCGCAAACTCCATCATTGCCCTATCCTAGAATAGATCTACCGCCCCCTAACTACCAATCCTCTCTCTAGATCCACAGCTCTGTTCCACCTC
TACAACCTCGCTTCTCATCGCCACCTCTTCTTTGCACCCTATATATCCCTTTTATGGTACAGATGCTAAACCTTCCTGGATGTTGCTTAACGCGTTGTCT
ATTATTACTCGCTATGAAACTTCATTACAAACGCAGCATGAATAGTAAGATAGTGAAAATCATAAGACACGATATACAGCTAACCAAACTCACATACAGA
TGCAAGACGCCGAGCCTATCGAACTATCGCTCCCACCTTGGTGATCCTTGCTGGAGCTCGCCTCCGGGGACGCCTGTGGTATTATAGAAGTAGTTGCAAT
GCCTGTTCCGGCCGTGAAAATGGTTCGATTGCCACAACATGGTTCATTAGAACAACCGGCGCCCTAAGTAACACAGTGACAGGCATAGTGTCAGTCCGCT
TTATATGCAAGCGCCTGCTATGGCCTCGCTCTTTTCCCTTAGTCGCTCCGACACTGACTTAAAAGAGTTTCAATAAGGAAGAGAACCAACCCTAGACAGA
AGTGCTACTACACTCATGCACGAGCGTGATCGCCATCTGAAGCTGTTCAGCATCAGTTAATATAACGATGCACACCCAGCGCATGAAGGATATGTCATGA
CACGCTAGGTGCGGAGATTCATACTGGAGCAGACATGCTCCCTCTAGGACGTATTGGTGACCAGGGTAAGAGGAGTCGTGAAGTAGTGTAGACGCGTAAC
GTACACAAACCGTTTCAAACTCAAACCCGTTCGCACGGCGTCTCCTGACTGAACTCAGTGCGCATAGATGCCAGACTTAAGGTCGCCCTGACGCATACGG
TATACGTGTAAAGCACATAGCGAGAGAACTCGGAATATCGTATCTTTATGCTGTATCGTGCATGTAGCTCAGCGCCGTCAAGAAAGAAAGATATAACGAA
GCAGGTATTGATGGTCCGTGACACCGTCTCCTCCCGTAAGCGAAACCACGTGAGCGAGGCGGTGCCCAGCCGAGAAGCAACATGCACGTGGTGAAACCGA
TAGAAACAGGTCGCGCCGCACTGCGATAGGCAAGTTAACTGTTGCAACATTTATGATTGCCGACGTCGTATAACGCATGCAATGAACGCTATATGAGTTT
CAACAATATTGGATACGCACATATATATCGGG
>LE_HBa0171H10_SP6_263391 (trimmed for quality and cloning vector)
A

This is probably not a useful sequence.

Problems:
  • High predicted error rate
  • Low complexity
  • Short cloning insert
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
100
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0171H10
Clone
Clone name
hba-171h10
LE_HBa0171H10
P171H10
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found