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Clone Read LE_HBa0171E23_SP6_263339

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0171E23_SP6_263339
Primer
SP6
ID from Seq. Facility
LE_HBa_171_E23-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
327 trimmed for vector and quality, 832 raw
Genbank Accession
DU084486
Sequence
>LE_HBa0171E23_SP6_263339 (raw untrimmed)
TCTATAGGGATTGAGTTTCCCCCTTTCAATTTAAAATGAGTTCATTTGGAAAATTGAACTTTACTATCCTTGTTCTACATTCTGTGGAAGTATAACAAGC
ATGCTATAAACTCATTCCCAAAATGATATCAAAATCAACCATATCAATATCATCCAATTCAACAACAGTAACTCTATTGGGCAACATTATAAGACATTTT
CTATAGGATATTATAGCTATAACAAAGAAACTCACCGAGGTAGTAACCAAAAATGGTTCAATTAAAATATCTGGCAATATATCAAACTTTCCATCTAGAA
AATGAGTAAAAAATTATAAGGTTGAACTGGGATCAAGTGAAGCATAAACATTAATAGAATATACTTGTAACATACCGGCCACCGCATCGGGAGAACTCTC
TTTTCCACTCCTAGAGAGAACATCACAAAACTGATTTCTCTTTGGAGCACCAAAACTAGGACGACCTGTCTGATCTTTGCTACTTCCCCTTCTTTTTTTA
TCTTACATTAGGAAAATCCCTCTCATTATTGTAATTCTTACTACTCCCTAATCAATTTTCCATTCCTTATTATTATTTACCCACTTTTTTATTCCCTACA
TTTCAAAGTAAGCCATCTTTTTTTCGTAGAATTACTACTTCTTCTCTATTTGTGTTTTTAGTTTAGAATTCTTATCACCCTTTATATCGATGTAATATGA
AAGGACACTTGTTTTGTAAAATCCGTTCTTAAATCTTAATTATTTTTATCTTATCTAAAACCTTATATCTTAAAATCAATAGTTCATATTTATTACATTT
TCATATTTATTCACTTTATTTTATATATTTAT
>LE_HBa0171E23_SP6_263339 (trimmed for quality and cloning vector)
ATTTAAAATGAGTTCATTTGGAAAATTGAACTTTACTATCCTTGTTCTACATTCTGTGGAAGTATAACAAGCATGCTATAAACTCATTCCCAAAATGATA
TCAAAATCAACCATATCAATATCATCCAATTCAACAACAGTAACTCTATTGGGCAACATTATAAGACATTTTCTATAGGATATTATAGCTATAACAAAGA
AACTCACCGAGGTAGTAACCAAAAATGGTTCAATTAAAATATCTGGCAATATATCAAACTTTCCATCTAGAAAATGAGTAAAAAATTATAAGGTTGAACT
GGGATCAAGTGAAGCATAAACATTAAT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.904236
Expected error %
1.08252
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38724.1| Score 114 E Value 6e-25 Identity 17.30% Align. Length 317bp (96.94%) Frame 2
putative retrotransposon protein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38744.1| Score 114 E Value 6e-25 Identity 17.30% Align. Length 317bp (96.94%) Frame 2
putative gag-pol polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0171E23
Clone
Clone name
hba-171e23
LE_HBa0171E23
P171E23
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found