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Clone Read LE_HBa0171D18_SP6_263314

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0171D18_SP6_263314
Primer
SP6
ID from Seq. Facility
LE_HBa_171_D18-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 1564 raw
Sequence
>LE_HBa0171D18_SP6_263314 (raw untrimmed)
CTTATAGTTATGGTCTGCCTAAATTGGTTGACACCTAATTGGCTGTACGGAATCGTATGGCTATGCAGTCTCTGGAGAGTTCTATCCCGACTCTATCATA
CTTCGTCTGAAGTCTTCATGCAATCCGTGTCCTTGCGAATCTCTATGTCGGTATACATACTCATTGTGATCTCTCGATTACAACATAACTACACATAGGC
GTGTTTCCATGCACTCTACCGTGTAGCCTATAGTAACCATGTAACGTCTATGTATCGTATGTTGTTCACACAATATACATTGCTCACGAGTGCATGTACT
TACATACGAGCGCAACTGAACATCTGTACGAANAATCCTCTTATCTGTATGTAGTATAGACCTGCACCTCACACTCTTTATCTCCACAGTGTTCGGGACT
GTCGTACGTCATANTACGCTCACACTTATCCAACATGAGAGTGCAGCGATCTCTCACTGCATCGCTTAGTTGTCTATGTACTTTGCGTAAGTTCGCCTCG
GCTTGTGTACATGTATTGTCTTCATCTTTACTACATATGCGATATATATGAATTACCTAGATATAGATTAGTACTGGTGCGTAAGTCCGCANATATCCGC
GAGCACGTCTCTCTTTCGATTCATGTGCTATCATACCGCTGTCCATATCCCATACAATATAATTGCATGCAGTTCTTTCATTTGGTGATCCTCAAATTGA
ACTGCTAGCTACAACTGCACAGAATGCTAGTGGAGTGTAGAATGCAAGTCTGTTGCTATTGTTACTGAATTGATACGTAGCACTCGCGTATGACTCCTAT
CTCAAGTACATAACTTCACACGTGCATCGTCTATCACGATGCAGATCGAGTCTAGTCACCGATTCCTACTATGTCTATATTTATGTATTGTCCTGTAGAC
TGCAGTCCGACTATCAGGCAGAGCAGTATTAACGCATTCTGAACATACAGTCGTCGTCTATTTNCGTATTACTATCTAACATCACTGCAGCTAGACTGCA
CGCGTACATCATCTGCCGGTGATATAGCGCCAGTGACACGTCTGATATCATACTAAGAACATCGTGCTTCTCATGCCGACTGTGATGAACTTGCATTGTG
TTCTGTCGCTACTGAGTAGTTGTCGCTTGCTGTTATGCTAGTATGATGAGTCCATCATTGTGCTTATGATACNATCTTATATNTTAACTGACGACCTGTT
AGACTGATAGCCTATATGTTGATACGCGTTGCAATCTTTACATCTCCGTGAAGAGTACAACTAGTAGACATCCTTGAGAAGTCCCTCTATAAATGACGAT
TACTTGAACGACTGGACGCTATTACGCTCATCTGATTGTAGTGCAATTGTCGATATAGTCAGCTGACANGTACTGCGCGTATTCTCTTACTACGATAAAT
GCATATCTTACTATGGCCTACTGTCTGATTATACGCTACCTCATACGTCTGCAGTCGGTTAGCCTATGTAACGATAGTTCTGATATGCATTGGTCATTCT
TGCTANTGTAGCTATATCACTGAGACGTCACTTCGCATGCTCATCAGTGATGTANGTGGTGCTG
>LE_HBa0171D18_SP6_263314 (trimmed for quality and cloning vector)
GC

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • High predicted error rate
  • Low complexity
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
5.39716
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0171D18
Clone
Clone name
hba-171d18
LE_HBa0171D18
P171D18
Clone type
BAC
Contamination
none
Estimated length
83,697
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found