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Clone Read LE_HBa0171C06_SP6_263282

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0171C06_SP6_263282
Primer
SP6
ID from Seq. Facility
LE_HBa_171_C06-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
397 trimmed for vector and quality, 854 raw
Genbank Accession
DU084458
Sequence
>LE_HBa0171C06_SP6_263282 (raw untrimmed)
GCAATGAGACTGACTTTCGCCTTTATTCTTTGCCAGATGAATATTTACACTCAATTGGAGTCATTGCCCTTTTAAAATTCAAAATTGTGAATTTTTCAAG
TATTTTTTGAATATAATAAGTTTGAGACAATGCTAGACCGTTAGGAGTATTAAGAATTTTAATTCCTAATATCACATCAGCAACTCCTAAATCTTTCATA
TAAAACTTACTAGCAAGCACACACTTTGTAGCTTTTATATTAGCAATGTCTTTGCTCATTATAAGCATATCATCTACATATAGGCATAAAATAACTTCCT
GATTTGGAGTATCTTTAATATAAACACATTTATCACATTCATTGATCTTAAATCCATTTGACAACATGGTTTGATCAAACTTTGCATGCCATTGTTTAGG
TGCTTGTTTTAGCCCATTAAGTGACTTAATAAGTTTGCACACTTTCTTTTCTTTACTATTAACTTACATACCTTCATATTGTTCTTTGTAAATTTGCTCT
TCAAGCTTCTTCATTTAATAAGGCTGTTCTCACATCCATTTGATGTATTTCAAGACCTTATTCTGCAGCTAGTGTAATAACCCCCGAATTGAGGTATACC
TGATTCACTGGCTAACATTTGCCATAAAATCCATATTTTCTTTTTTCCTAAATTATATGATGAGCATTCTTTGTTCGTTTTCTTCTATTATTATAATAAT
CTTTCTTTTTTTTTTCTATAGATTCCATTTTTTCTCCTTTGTGCCTTTTTCTCTTTTAAATATTATCTCCCTACTTCCTATTTTTCTCTTTCTATTTTTT
TTTCTTATATCTTTATTCTCTACAAATTCCTATTCTGATTTTTTTTCTTTTATA
>LE_HBa0171C06_SP6_263282 (trimmed for quality and cloning vector)
GACTTTCGCCTTTATTCTTTGCCAGATGAATATTTACACTCAATTGGAGTCATTGCCCTTTTAAAATTCAAAATTGTGAATTTTTCAAGTATTTTTTGAA
TATAATAAGTTTGAGACAATGCTAGACCGTTAGGAGTATTAAGAATTTTAATTCCTAATATCACATCAGCAACTCCTAAATCTTTCATATAAAACTTACT
AGCAAGCACACACTTTGTAGCTTTTATATTAGCAATGTCTTTGCTCATTATAAGCATATCATCTACATATAGGCATAAAATAACTTCCTGATTTGGAGTA
TCTTTAATATAAACACATTTATCACATTCATTGATCTTAAATCCATTTGACAACATGGTTTGATCAAACTTTGCATGCCATTGTTTAGGTGCTTGTT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.917267
Expected error %
0.74347
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g23160.1 Score 67 E Value 3e-12 Identity 10.10% Align. Length 356bp (89.67%) Frame 1
68417.m03342 protein kinase family protein contains Pfam domain PF00069: Protein kinase domain
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAU89783.1| Score 204 E Value 8e-52 Identity 26.70% Align. Length 377bp (94.96%) Frame 1
putative retrovirus-related pol polyprotein-like [Solanum tuberosum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38766.1| Score 182 E Value 3e-45 Identity 25.20% Align. Length 356bp (89.67%) Frame 1
putative polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0171C06
Clone
Clone name
hba-171c6
LE_HBa0171C06
P171C06
Clone type
BAC
Contamination
none
Estimated length
95,162
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found