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Clone Read LE_HBa0168I13_SP6_263079

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0168I13_SP6_263079
Primer
SP6
ID from Seq. Facility
LE_HBa_168_I13-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
596 trimmed for vector and quality, 923 raw
Genbank Accession
DU083606
Sequence
>LE_HBa0168I13_SP6_263079 (raw untrimmed)
AGTTAGATTGTGACACATCCATAGCAAATCCAGGAATTGACTTGACGGTGACTGTCTTGAAGACTGGCTTCTGGCCTAGCTACAAGTCTTTTGATTTCAA
CCTCCCGACAGAAATGGTATATTATATTATATGTTAAATTTCATTATGCAGTTGAATTTATCTTGGTTTTGCCCTTGTTCCTCTTGGTGAAGTTCTTTTC
GTTGGCAAAGAGTGATGCATGTTTTTTTGCTTGAATCATATTTCTGCTCAAACGTCTTGTCAATGATTCATTTTATGTTGCGCATTGTCAGATTAGGTGT
GTTGAAGTATTCGAGGAGTTTTATCAAACAGAAACGAAGCACAGGAAGCTTACGTGGATATATTCTTTGGGAACTTGCATTATAAATGGAAAATTTGAGC
CGAAGTCTATTGAGCTCGTTGCCACTACTTATCAGGTTGATTGTTGGCTACTTTTTGAAATCGGATAGGCTTAGTTAAGTTTGAAACATTTTTATTACCT
TACCAATGAGAAAACGAGATTGAGATTTCTTCCTTTTTGTAGGCTTCTGCTCTGCTGCTCTTTAATGCATCAGATAGATTGAGTTATCAGGAAATCATGA
CACAATTAAACCTGTCAGATGATGATGTTGTTGGGCTTCTTCATTCTCTTTCATGTGCTAAGTACAAGATTCTCAACAGGCAGCCCAGCACCAAAACAAT
TTCTCCCACGGATGTCTTTGAGTTCTACTCAAATTTCCCTGACAAATTGAAGAAGAACCACGGTACATTATTGATTAAGTAAGGGTAGCCCTTTCTACTA
TTAATTTATTTCACTTCATTTAATTGACCCCACTGAGAAAAATTGCCTTATAAGTATATTCTAATTTCTTTCTCCCTTCCTGGATTGTATGAAAATAATA
ATTGTTCATTGAAAAAACTCTTC
>LE_HBa0168I13_SP6_263079 (trimmed for quality and cloning vector)
ATAGCAAATCCAGGAATTGACTTGACGGTGACTGTCTTGAAGACTGGCTTCTGGCCTAGCTACAAGTCTTTTGATTTCAACCTCCCGACAGAAATGGTAT
ATTATATTATATGTTAAATTTCATTATGCAGTTGAATTTATCTTGGTTTTGCCCTTGTTCCTCTTGGTGAAGTTCTTTTCGTTGGCAAAGAGTGATGCAT
GTTTTTTTGCTTGAATCATATTTCTGCTCAAACGTCTTGTCAATGATTCATTTTATGTTGCGCATTGTCAGATTAGGTGTGTTGAAGTATTCGAGGAGTT
TTATCAAACAGAAACGAAGCACAGGAAGCTTACGTGGATATATTCTTTGGGAACTTGCATTATAAATGGAAAATTTGAGCCGAAGTCTATTGAGCTCGTT
GCCACTACTTATCAGGTTGATTGTTGGCTACTTTTTGAAATCGGATAGGCTTAGTTAAGTTTGAAACATTTTTATTACCTTACCAATGAGAAAACGAGAT
TGAGATTTCTTCCTTTTTGTAGGCTTCTGCTCTGCTGCTCTTTAATGCATCAGATAGATTGAGTTATCAGGAAATCATGACACAATTAAACCTGTC

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.95204
Expected error %
0.108527
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g02570.1 Score 87 E Value 3e-19 Identity 70.90% Align. Length 590bp (98.99%) Frame 2
68417.m00351 cullin family protein similar to cullin 3 [Homo sapiens] GI:3639052; contains Pfam profile PF00888: Cullin family
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g02980.1 Score 72 E Value 2e-14 Identity 56.40% Align. Length 322bp (54.03%) Frame 3
68414.m00268 cullin family protein similar to cullin 1 [Homo sapiens] GI:3139077; contains Pfam profile PF00888: Cullin family
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAC87837.1| Score 99 E Value 4e-23 Identity 81.80% Align. Length 322bp (54.03%) Frame 3
cullin 1C [Nicotiana tabacum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAC10548.1| Score 96 E Value 2e-21 Identity 76.40% Align. Length 322bp (54.03%) Frame 3
cullin-like protein1 [Pisum sativum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0168I13
Clone
Clone name
hba-168i13
LE_HBa0168I13
P168I13
Clone type
BAC
Contamination
none
Estimated length
105,964
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found