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Clone Read LE_HBa0168D01_SP6_262967

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0168D01_SP6_262967
Primer
SP6
ID from Seq. Facility
LE_HBa_168_D01-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
428 trimmed for vector and quality, 925 raw
Genbank Accession
DU083511
Sequence
>LE_HBa0168D01_SP6_262967 (raw untrimmed)
CATATCAACAAGTTTGAGACAATTATGGGAAGATAGATCAGATCGATACGCGAATATGACCATACTTGTTTGATATTGGTTATAGCAAATGGTCAAGAGC
TTACTCTAATTGTAAGCGCACATGGACCATGACTTCAAACATCGCGGAGTCATTGAATAATGTTAACAGGTTAGCACGGAGGTTACCGGTGATTTCACTT
CTTGAGTTTACGAGGGTAACAATTCAGAGGTGGATTCACAAGCATAATGAGGAGGCTGATAAGACAATATCTGATATGACAAAAAATATGATATTTATCT
ACAGAAAAGTATTGCGTTGTCGTACAATATGAGGGTATGTGTTTCACTGTAATGTATTTTTACTTCTCAATAATCTGCAGCATGTATAATTTTTTTTTAC
ATAGGTGATACCTTCAACTGTTGATCTGCATACTGTAGCTGAAGGTGCAAAGAAATTCATAGTTAATTTGAACACAAGGAGGTGTAGTTGCGGAAGATTT
CAACATAATGTGGTCATGCAAATTGTCTGTTTTTCCGTGACTAGATATTACCTGAAGCAGATTTCTGCTCTGATCTTTATAGTCTCATTATCTTCAAAAC
TGCTTTATGTCATTTCTCTTTCGTGTCTATCCCTAGCACAATCTCATCCTCATTTTCCCCAGATTATTTCTTCAGAACCTTTTACTTGATTAAATTCTAT
ATACTACAAACATGCCTTGGTTATCACCTACTATCCTTAATTATCTTACATCATTTTTCTTATGCAACTTCTCCTCTTTCATCACTCACTAATTTTCTCT
TCTTATACTTCTTTCTCACCAATCTGCTTACTCATACATTTATTATCTATTATCAGACTTTTATTGTCTTATACTATATCTCGTGATACTTGCAATCATA
CACCTCTTAATTCTCCTTTACGTCG
>LE_HBa0168D01_SP6_262967 (trimmed for quality and cloning vector)
TTTGAGACAATTATGGGAAGATAGATCAGATCGATACGCGAATATGACCATACTTGTTTGATATTGGTTATAGCAAATGGTCAAGAGCTTACTCTAATTG
TAAGCGCACATGGACCATGACTTCAAACATCGCGGAGTCATTGAATAATGTTAACAGGTTAGCACGGAGGTTACCGGTGATTTCACTTCTTGAGTTTACG
AGGGTAACAATTCAGAGGTGGATTCACAAGCATAATGAGGAGGCTGATAAGACAATATCTGATATGACAAAAAATATGATATTTATCTACAGAAAAGTAT
TGCGTTGTCGTACAATATGAGGGTATGTGTTTCACTGTAATGTATTTTTACTTCTCAATAATCTGCAGCATGTATAATTTTTTTTTACATAGGTGATACC
TTCAACTGTTGATCTGCATACTGTAGCT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.955492
Expected error %
0.0400494
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAV31178.1| Score 149 E Value 2e-35 Identity 19.40% Align. Length 407bp (95.09%) Frame 1
putative transposase [Solanum tuberosum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAC95212.1| Score 69 E Value 5e-11 Identity 13.90% Align. Length 266bp (62.15%) Frame 1
Mutator-like transposase [Arabidopsis thaliana] pir||A84694 Mutator-like transposase [imported] - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0168D01
Clone
Clone name
hba-168d1
LE_HBa0168D01
C08HBa0168D01
P168D01
Clone type
BAC
Contamination
none
Estimated length
74,713
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found