Clone Read LE_HBa0165L04_SP6_262786

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0165L04_SP6_262786
Primer
SP6
ID from Seq. Facility
LE_HBa_165_L04-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
523 trimmed for vector and quality, 975 raw
Sequence
>LE_HBa0165L04_SP6_262786 (raw untrimmed)
AGGGGAGATGGATAAACATATTGTCCTATCATACTGTTGCTTTGAGTCATTCAAAGTTCTTGCACATAACTATCTTGACGTCGTTGAATCTCATGTTCAC
TTTCCTCAGATTCGTCGTTTATTAGAGGAAACTAATATGACTCCTGCTGATATTGCTGAGAATTTGATGCCTAAGTCTTCAAAGGAAAATGCAGATATTT
GTTTAGAGAGATTGATTAAAGCTCTCGAAACTGCAAAAGAGGAAGCGAAACTTAAGGCTGAGGAAGAAGAGAGAGCAAAGGCGGCTGAGAAGGAGAAAGA
AGAGAAAGATCGCGAGGAAAAGAAAGAAGTAACAGCTACTGAAGAAGCTAAGAGTGTTGACAGTGTAAACGAAAAAGATAATGGTGTTAAGGAAAATGGT
AATGTTAGCAAAAGTTGATGAATACACATATAAGAAAGTATGTTTGGAGGTGTTTTAGCTTTCTGTTTTCTACAATTAGCTGAACTTGTAATAAGTTGTT
GGTGAAGGTTAATAAGAAAACTTTTTTTAATCATGAAACCCTTCAATTTTAGTATCACAATCCATATTTTGGCTCGCGTCTTCAAACGAACTAACAAGTA
ACTGCTACGCCGATTAATTTCTCATATGGTCTTTTCTATGTCAAACTTCTGTCATTTTGTCTGAATTTTAACCCAATTGGACTTATTATTTTCTGGGCTT
TCGTTATGGCTATAATCTAATTCCTCCATTTAAATCGCTAATATCGATTTCTTCTAAATGAGATATCTGTATGCCGTCATTTAGTAAATATATTGATTCT
ATCCTATTGGCAAAGGAACCATTACTGCTTCCTTTTTAATTTTAAGACTTATTCTAAATACACATTAATATTCGTGTCTTCCAGGTAACTCTTTTAATAA
GACATAGTAGGAATAGTTCTTCATCAATTCTTATATGACTTTCAATTCTATACTTCTACTTTTATATACCTATTG
>LE_HBa0165L04_SP6_262786 (trimmed for quality and cloning vector)
GGGGAGATGGATAAACATATTGTCCTATCATACTGTTGCTTTGAGTCATTCAAAGTTCTTGCACATAACTATCTTGACGTCGTTGAATCTCATGTTCACT
TTCCTCAGATTCGTCGTTTATTAGAGGAAACTAATATGACTCCTGCTGATATTGCTGAGAATTTGATGCCTAAGTCTTCAAAGGAAAATGCAGATATTTG
TTTAGAGAGATTGATTAAAGCTCTCGAAACTGCAAAAGAGGAAGCGAAACTTAAGGCTGAGGAAGAAGAGAGAGCAAAGGCGGCTGAGAAGGAGAAAGAA
GAGAAAGATCGCGAGGAAAAGAAAGAAGTAACAGCTACTGAAGAAGCTAAGAGTGTTGACAGTGTAAACGAAAAAGATAATGGTGTTAAGGAAAATGGTA
ATGTTAGCAAAAGTTGATGAATACACATATAAGAAAGTATGTTTGGAGGTGTTTTAGCTTTCTGTTTTCTACAATTAGCTGAACTTGTAATAAGTTGTTG
GTGAAGGTTAATAAGAAAACTTT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.940921
Expected error %
0.223557
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g28540.1 Score 100 E Value 8e-22 Identity 21.80% Align. Length 215bp (41.11%) Frame 2
68416.m03564 AAA-type ATPase family protein contains Pfam profile: ATPase family PF00004
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g28580.1 Score 98 E Value 2e-21 Identity 22.70% Align. Length 215bp (41.11%) Frame 2
68416.m03568 AAA-type ATPase family protein contains Pfam profile: ATPase family PF00004
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT39939.1| Score 161 E Value 7e-39 Identity 20.40% Align. Length 410bp (78.39%) Frame 2
putative ATPase protein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAU89729.1| Score 160 E Value 1e-38 Identity 19.70% Align. Length 410bp (78.39%) Frame 2
hypothetical protein [Solanum tuberosum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0165L04
Clone
Clone name
hba-165l4
LE_HBa0165L04
P165L04
Clone type
BAC
Contamination
none
Estimated length
103,744
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found