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Clone Read LE_HBa0165I20_SP6_262688

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0165I20_SP6_262688
Primer
SP6
ID from Seq. Facility
LE_HBa_165_I20-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
9 trimmed for vector and quality, 1058 raw
Sequence
>LE_HBa0165I20_SP6_262688 (raw untrimmed)
AAGCAGGGATTGGTATGTCCTCCTAGATTTTAGGACTTCTTGATGTTTAGTTTTTCTTAAAAGTGTTGTACTACACTCTTTCTAGTTTCCTATATGTTTT
AGTATGGGCTGGTGCCCTAATATATTCGCACGCAAAAGATGACGACTTTGTGACTTAGCCTACCATTTTATTTATCCACTCAAAGACATATTTTGAAGTA
TTATAATTGTGTCGCAATACAATTTAATTCTGCATTACTTTCTCATGTATGTATGCAATTAACGATGTCCAAGGACTCGTTCAATACCTCCCAGAGGTCT
AGGACGCCCGTGTTCATATTCCAGATGGTCCTAACTTCTAGGGGGTACTCCAGGGTTGCTTTAATAGGGTCTTTATCACTACTTCATGTGTTGTATCCCT
TGGTCTCTTATGATTTATAGAATGTGTCATAACTCGTCTTATCCTTGTTAACGTTATATTGTTAAGAACTTTTGTTCCGTATGTGCTATGTTTTCAACAT
GACTCTCGTATATGGCATTTAACTCCACTACTGTATTACTAGCTCTGTAGTTCCTAGACCATTTCCCGTCGATTATCTCTTACATACTCAATTGTAATGT
TCTTCATAACGAAGTTAATTTTTATTAATGCACTCGTTTTAATTACATACCTCAGTAATGTTATCTTACTCTGTTTCACTGCTAAATGGCTCCTTATCAT
GATAAGTTTACACCATCTCTACATAATCTTACTCTAAGGTTTTTGTGAACCTCATGGGCTAGTGCCATCAATAAGAACTTCCTTCTTTCTCTTTTTCCTA
TTGATATTTCATCCTGCCTTAATACACTTTCTATCATACATCAATGCTTATGCCTAGCTTCTACTACACACTTTATCATTAGATGACATTCTCCTCTGAT
ATTTACATATAATCATTTAGAATTCATATTTCCCTGCCTTGTTCATCTTGATGAAAGTCTGCTAATTCTTTCCATAGAAAGTTTTGTTATAGTTGTTCGA
GTATAAGTTCACTGAATACCATCGCTTCTGCGCTCATCTCTTCTGTCCTTTACTTATT
>LE_HBa0165I20_SP6_262688 (trimmed for quality and cloning vector)
ATGACGACT

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.288844
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0165I20
Clone
Clone name
hba-165i20
LE_HBa0165I20
C12HBa0165I20
P165I20
Clone type
BAC
Contamination
none
Estimated length
125,820
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found