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Clone Read LE_HBa0163F03_SP6_262089

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0163F03_SP6_262089
Primer
SP6
ID from Seq. Facility
LE_HBa_163_F03-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
4 trimmed for vector and quality, 1645 raw
Sequence
>LE_HBa0163F03_SP6_262089 (raw untrimmed)
GGTCTAAATAGACTTGTATTATTGATAAGAGTCAAATAGTATGTATGCATATGAGTATCAACATGACTCCACCTTAAATGAGAACTCTGACCAGAGTCTC
ACACATCCATTCCAACACGACTCTTATTCTGAGAGTCGAACGTAGGCAGCTGTCAGAAGCATATAATGGACAATCATGACACACCTCAATTCATGTATAA
TGATTACATCCTATAACGACACATAGCATAGCATGANTCTCTATTGATGTTCGCCTTGCATTCAACATTACGCAATACACGATAACATACACAATGATAT
GAACACACTCAAGCGACTATACGTATTCGATTGCACTGTATGTAGTATCAGCCACTGTAATTCGTTGTTACATCACTCGATTCGCACTGTATACATAGTT
TATAATACGTATAAGAGATACTATACTATTCCTTTGGTATGAACTCAACTCTTCGAACTCGCGTAATACTAAGCAAGATTATCTCTCGCGCTATATACCG
AATTTCGTCATCAATTATAAACTATAGCCTCTCCTGATGTAATATTTTATACACACTACGTCATTATCATAGCCACTGAATAAGTATTAGTATATATTAT
CCCATAGTCATATAGATCTCCTGTCCTATGCTATATCTAATGATATAAGACAAAATGTAAGCTATCCGTTGAATCGACTTTGATCGACATATAGTAAAAT
ATACCATCATCTTATGCATACATACTTAGATACAAACTAATATATCAGTCATTACCATATAATGCACCATTATACGAATTACTCATGCACTTAGACAATC
ACATCATACGTCACATATCAACTATATATAAAATTTNTCTATTTACAATCTGCAAATGTTCACTAGTTCCTATTATAATTTCGTCTTTACATAACTGAAA
TATATAAATATTACTTTTATATCATTATCTCTACTAATTATCTTCTCTTCATAATTCATCATCTGAGCTATGTGATTAATGTACTTGAATAAGAACATAA
TCACTCCCTAAGTATTTAATGATAATGACTACATCTATATCACCTACCACACTTCCACTATATATACCGCATGAACCTACTACTTACCAGACCACTACAT
GAACTTACACTCTTTATCATTTTCTTAATGTACTAATTGATTTACACATACTATGATATCATCACATATGTGTATACACAGCTTAACCAGATTAAGATTC
AATACCACTCTACTCACTGATGATAACGTTCAATCAATTATCAATCTTATCCCTCACGTCTCTGATTTCCGCTTGTATACAATCTCATCTGATCTATAAA
TATGATCAAAATAATCCATACTACTATATCTTATTCGACTACCCATATATAAACTATAACTACTATACTACTCATCACTAACACATCCACTCATCTTACT
ACTTTGCTATATCATTAATACATATAATATCGTATACATACATATTCAAACTGAATACACATACTCTACACTAAATTATCCTCTCTATCCTACACTCCTA
CCCTTTCATACATACTGTCAGCTTCTCCTCTCATCTTATATACACTTCNACCTATCATACTCATAACATTATGGCACTTCTGATGTGACGTCATATCTTA
TAATATCATATTGAATATGCCACACATACTCGAACTCGTCACATG
>LE_HBa0163F03_SP6_262089 (trimmed for quality and cloning vector)
CTCA

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.756878
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0163F03
Clone
Clone name
hba-163f3
LE_HBa0163F03
P163F03
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found