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Clone Read LE_HBa0140K11_SP6_261076

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0140K11_SP6_261076
Primer
SP6
ID from Seq. Facility
LE_HBa_140_K11-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
623 trimmed for vector and quality, 1006 raw
Genbank Accession
DU082676
Sequence
>LE_HBa0140K11_SP6_261076 (raw untrimmed)
NAAGTCTCTCTTCTATTTTCTCAAGTTGGATCATCGAATTCATACTATCAAATTATGGAAGAAGTAACTGTCATATTAATCATAATAGGAATATTAATTA
TTGAACTATATTAAAATACAACAACATCTTCGATTGTTAGAAATTTTTATCAAAATGTTAGTAAAACGTAAACTTAGAAATTAGGAAATTAAACATGCCA
TGGTCGGTCCAACAATCATTACTTAGCTTATACACTTGTAATTACATACTAAAATCGAAGTGTATTATTTTAATAATTGAATGACTTTTATCTTATGATT
TGAGAATTGACCCCTCTAAAAGCATTAACTTCCCACCACCAATCACATGCAACCTTACTTATTGTCATTGCCCAAACACTTGTATATAAACACCTCTCCC
CTCTCATTTCTCTTCAAACTATTCTCTCATTACAACAAACAAAAAGAAATAAGAAAGAAATTCTACTACTACTATTACTACAACAAGTTTAAGTTTGATT
AGTGAAAAAAATAAGAAAAATGTTTAGTTTTTCAGATAACGATATGTTTTCGAGGCGATGTGTTTGGGTAAATGGCCCTGTTATTGTTGGTGCTGGTCCA
TCAGGATTAGCTGTTGGAGCTTGTTTGAAAGAAGAAGGTGTACCTTGTGTTATATTGGAACGATCTGATTGCAATGCTTCGTTATGGCAAAAAAGAACTT
ACGATCGATTAAAGCTTCATCTTCCTAAACCAATTTGGTCAATTGCCTAAATTTTCCTTTCCCAGAACATTACCCTGGAATATCCTTTCTAAAAGACAAT
TCCACTCAAAAACCTTGAAATCATATGCCCAAACATTTTGAATTTAACCTCACCATTTTAATGAATTGGGTTTAATCCTGCTAAATTACAATGAAATTTT
TGCCCAATTTTGGGAAGGGTCCAAAAATCGTTTTCACCCCGAATGGAAGCCCTAGGTTTAAATTATTTTTTGTCCAAGGGGCTTTGCTCATTCTTCATGG
GGGGAG
>LE_HBa0140K11_SP6_261076 (trimmed for quality and cloning vector)
TCGAATTCATACTATCAAATTATGGAAGAAGTAACTGTCATATTAATCATAATAGGAATATTAATTATTGAACTATATTAAAATACAACAACATCTTCGA
TTGTTAGAAATTTTTATCAAAATGTTAGTAAAACGTAAACTTAGAAATTAGGAAATTAAACATGCCATGGTCGGTCCAACAATCATTACTTAGCTTATAC
ACTTGTAATTACATACTAAAATCGAAGTGTATTATTTTAATAATTGAATGACTTTTATCTTATGATTTGAGAATTGACCCCTCTAAAAGCATTAACTTCC
CACCACCAATCACATGCAACCTTACTTATTGTCATTGCCCAAACACTTGTATATAAACACCTCTCCCCTCTCATTTCTCTTCAAACTATTCTCTCATTAC
AACAAACAAAAAGAAATAAGAAAGAAATTCTACTACTACTATTACTACAACAAGTTTAAGTTTGATTAGTGAAAAAAATAAGAAAAATGTTTAGTTTTTC
AGATAACGATATGTTTTCGAGGCGATGTGTTTGGGTAAATGGCCCTGTTATTGTTGGTGCTGGTCCATCAGGATTAGCTGTTGGAGCTTGTTTGAAAGAA
GAAGGTGTACCTTGTGTTATATT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.931645
Expected error %
0.231318
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g04610.1 Score 69 E Value 2e-12 Identity 26.50% Align. Length 116bp (18.62%) Frame 2
68414.m00455 flavin-containing monooxygenase / FMO (YUCCA3) identical to gi:16555356
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g43890.1 Score 67 E Value 8e-12 Identity 23.60% Align. Length 122bp (19.58%) Frame 2
68418.m05367 flavin-containing monooxygenase family protein / FMO family protein similar to flavin-containing monooxygenases YUCCA [gi:16555352], YUCCA2 [gi:16555354], and YUCCA3 [gi:16555356] from Arabidopsis thaliana; contains Pfam profile PF00743
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_171955.1| Score 69 E Value 7e-11 Identity 26.50% Align. Length 116bp (18.62%) Frame 2
flavin-containing monooxygenase / FMO (YUCCA3) [Arabidopsis thaliana] gb|AAL23752.1| flavin-containing monooxygenase YUCCA3 [Arabidopsis thaliana] gb|AAS99690.1| At1g04610 [Arabidopsis thaliana] pir||G86178 hypothetical protein [imported] - Arabidopsis thaliana gb|AAB80641.1| Contains similarity to human dimethylaniline monooxygenase (gb|M64082). [Arabidopsis thaliana] gb|AAR92277.1| At1g04610 [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0140K11
Clone
Clone name
hba-140k11
LE_HBa0140K11
P140K11
Clone type
BAC
Contamination
none
Estimated length
130,031
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found