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Clone Read LE_HBa0140A10_SP6_260631

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0140A10_SP6_260631
Primer
SP6
ID from Seq. Facility
LE_HBa_140_A10-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
552 trimmed for vector and quality, 1008 raw
Genbank Accession
DU082285
Sequence
>LE_HBa0140A10_SP6_260631 (raw untrimmed)
NNGGAGTTTCAGCCTCGACACTCAAATTTCAACTCTTTTGGGTCAGGTAGTCAAGGGAGATACAATGGACGCAAAACAATCCACAAACCTCTGATAGTAT
CCCGCTCGACCCAAGAAACTTTGAATGTTGATTGGAGTCAATGGTCTAGGCCAATTCTTGATCGCCTCGGTTTTCCTTGGATCAACCTCAACTACTTCAT
TACAGATGATATGACCAAGAAACGCCATCGACTTCAACAAAAACTCGCATTTTCTATACTTGGCAAATAATTGGTTTTCCTTAAACACTTGCAACACCAG
TCTCAAATGATTCATGTGTTCACCCTCATTTTATGAATACACCAAGATGTCATCAATGAAGACCATGACAAATAAATCTAGGTAATTTCAAAACACCCTA
TTCATGAGATCCAAAAATGCCGCGAGTGCATTAGTGAGACCAAATGACATTACTAAGATGTCATAGTGGTCATATCTAGTATGAAATACCATTTTAGGTG
TATCCTCACCCCTTACGCTAACTTGGTCATACCCCCCCAACCTCAAGACTATCATAGAAAAGTAGTTTCCCCGTTGGAGTTGATCAAACAAGTCTTCAAA
ATGAGGGAGAGGATAATTGTTTTAATAATGATAAAAATGCACACTCTAAGGGACCCCCCCTTTTTTCTTCAAAACAAAAACTTTAAAACCCCTTGGAGAA
ATTATAACCCTTTACCTAAATAGTTTTTTGATTGGAGCCCTCAAAATATTTTATTTCTAGCCCGGTTACCTTCCTATTATGGGAGGAATCTAAAAAGGGG
TTTGGTTATCCGGGAACGCAACTATATCTCAATATTCCACTTTATCATTTCGGGAAAACCCTCCTAAAAATTCTCCCACCCTAATGGGGACCCTTTCTCA
ATGGGTAAAAATCTTTCCAAGTTTCATGATATTCCTAAATCCCCCACCAATAGTTGTTTTAAACCCCTCTTTTGGAAGAGATACCTTTCTTACTCCTATT
ATTCAGAG
>LE_HBa0140A10_SP6_260631 (trimmed for quality and cloning vector)
CTCGACACTCAAATTTCAACTCTTTTGGGTCAGGTAGTCAAGGGAGATACAATGGACGCAAAACAATCCACAAACCTCTGATAGTATCCCGCTCGACCCA
AGAAACTTTGAATGTTGATTGGAGTCAATGGTCTAGGCCAATTCTTGATCGCCTCGGTTTTCCTTGGATCAACCTCAACTACTTCATTACAGATGATATG
ACCAAGAAACGCCATCGACTTCAACAAAAACTCGCATTTTCTATACTTGGCAAATAATTGGTTTTCCTTAAACACTTGCAACACCAGTCTCAAATGATTC
ATGTGTTCACCCTCATTTTATGAATACACCAAGATGTCATCAATGAAGACCATGACAAATAAATCTAGGTAATTTCAAAACACCCTATTCATGAGATCCA
AAAATGCCGCGAGTGCATTAGTGAGACCAAATGACATTACTAAGATGTCATAGTGGTCATATCTAGTATGAAATACCATTTTAGGTGTATCCTCACCCCT
TACGCTAACTTGGTCATACCCCCCCAACCTCAAGACTATCATAGAAAAGTAG

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.963788
Expected error %
0.191619
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38724.1| Score 223 E Value 2e-57 Identity 21.20% Align. Length 512bp (92.75%) Frame 1
putative retrotransposon protein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38744.1| Score 223 E Value 2e-57 Identity 21.20% Align. Length 512bp (92.75%) Frame 1
putative gag-pol polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0140A10
Clone
Clone name
hba-140a10
LE_HBa0140A10
P140A10
Clone type
BAC
Contamination
none
Estimated length
104,950
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found