Clone Read LE_HBa0137C03_SP6_260319

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0137C03_SP6_260319
Primer
SP6
ID from Seq. Facility
LE_HBa_137_C03-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
245 trimmed for vector and quality, 809 raw
Genbank Accession
DU081962
Sequence
>LE_HBa0137C03_SP6_260319 (raw untrimmed)
GTGAAGCTCCTATTCTCGGTTTGGGTAGGCTGCTAATGCAAGAGAAGAATGTAATTGCTTATGCCTCGAGGCAATTAAAAGTGCATGAACGTAATTATCC
TACCCACGATTTGGAGTTAGCGGTGGTAGTGTTTGCATTAATGCAATGGAGACATTATCTATAAGGGGTTAAATGTGAAGTATATACGGATCATCGTATT
TTACATTATGTCTTTACTCAGAAAGATTTGAACTTGAGACAGATGAGATGGATGGAACTACTGAAGGACTATGTTATCACTATCTTGTACCATCCGGAAA
AAGTAATGTTGTGGCATATGCTTTAAGTTAAAAGGTATGGAGCATGCTGAATTATAAACCTATTTCGTAGGTCTTCATGATTCCTCTCCTTCTTTTATTG
CTTATACTCAATTACTAACTCCTTTATTCTTTTTAAACATACCTTTTACAATTCCTTTCTATTTTCTCTTTCTATATATGCTTTATTTTTCTCTTTCTCC
TTTCTACTCTATTATTATCTCGAATTTACTTATTCTTCAAATTAATTATTTATTCTATTTTTTCTACATTTTTACCTTAATCGTACTATTGCTTTTTAAC
TATGGATTTTATAATTTTACTTTATTCTGTCTTTTATTTTTTTCTCTTCTATTTTTTTATGTTACTATATTTTCTTTCTACCGTTCTTTTTATTCTAACT
ATTACTTTATTTAAGTACTGTTTATTCTACCACTTCCCTATCTTTCTATCATCTCATCAATACTTCTATCTTTTTTCTGTACTTACTTACATACTAATTT
CTGATTCTG
>LE_HBa0137C03_SP6_260319 (trimmed for quality and cloning vector)
GCTAATGCAAGAGAAGAATGTAATTGCTTATGCCTCGAGGCAATTAAAAGTGCATGAACGTAATTATCCTACCCACGATTTGGAGTTAGCGGTGGTAGTG
TTTGCATTAATGCAATGGAGACATTATCTATAAGGGGTTAAATGTGAAGTATATACGGATCATCGTATTTTACATTATGTCTTTACTCAGAAAGATTTGA
ACTTGAGACAGATGAGATGGATGGAACTACTGAAGGACTATGTTA

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.946177
Expected error %
0.33346
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38745.1| Score 134 E Value 6e-31 Identity 25.40% Align. Length 239bp (97.55%) Frame 3
putative polyprotein, 3'-partial [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT66771.1| Score 132 E Value 3e-30 Identity 25.00% Align. Length 239bp (97.55%) Frame 3
putative polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0137C03
Clone
Clone name
hba-137c3
LE_HBa0137C03
P137C03
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found