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Clone Read LE_HBa0125K20_SP6_260065

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0125K20_SP6_260065
Primer
SP6
ID from Seq. Facility
LE_HBa_125_K20-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
574 trimmed for vector and quality, 968 raw
Genbank Accession
DU081721
Sequence
>LE_HBa0125K20_SP6_260065 (raw untrimmed)
AGTTGCATTGGTAGAGACTTGGTGAATAGATCAGCCACATTGTCACTTGAACGAATTTGTTGCACATTTCTATCACCATTCTTTTGAAGTTCATGTGTAT
ATAAAAGCTTCGGTGAAATATGTTTTGTTCTATCTCCTTTTATAAATCCTCCCTTAAGTTGTGCTATGCATGCTGCATTATCTTCATATAAAGTGGTGGG
TACTTTATCACATGTCAAACCATATTTCTCTCGAATGAGATGTATCATAGACCTTAACCACACACATTCTCTACTTGCTTCATGAATAACTATTATTTCA
ACATGATTAGATGAAGTGGCTACGATGGACTGCTTTGTAGATCTTCAAGATATGACAGTCCCCCCACATATAAACACATAGCTTGTTTGGGATCGAGCTT
TGTGTGGATCAGATAAATATCAGCATAACCAACAAGATTTGGGCTACAATTAATATAATAAGATAAACACATATCAGTTGTCCCTTTAAGATATCGTAAA
ATGTGTTTGATCTCATTCCAATGTCTCCTAGTAGGAGCAGAACTATACCTTGCTAACAAGTTAACAGTAAAAAAACTATATCAGGCCTTGTAGTATTAAC
AAGATACATTAGTGCACCAATTGCACTAAAATATGGTATTTCAAAACCAAGAATTTCTTCATCCTTTTCTTGAAGTCGGAATGAATCTTTATTCACATTC
AAGTGAACGAACAACCATTCGGATTACTTAAATCCTGGCCCCTTCATCCATAAAAAAATTTTTTTAACAATTTTTTCTAAGTTAAGCAAAATTGATTAAA
AAAAAAAACCCTTTTTCCAAAATGTTCAATTTTCCAAACCATAAAATAAATTTTTTCCCCTTTCCAAATATTTTTCCATTTAAAATTTGGTTTTTTAAAA
AAAAACAAATTACATTTTATAAACCTTCTTTTGTAAAATATCAATTAAATATTATATTTTCCTTCTAC
>LE_HBa0125K20_SP6_260065 (trimmed for quality and cloning vector)
TTGGTAGAGACTTGGTGAATAGATCAGCCACATTGTCACTTGAACGAATTTGTTGCACATTTCTATCACCATTCTTTTGAAGTTCATGTGTATATAAAAG
CTTCGGTGAAATATGTTTTGTTCTATCTCCTTTTATAAATCCTCCCTTAAGTTGTGCTATGCATGCTGCATTATCTTCATATAAAGTGGTGGGTACTTTA
TCACATGTCAAACCATATTTCTCTCGAATGAGATGTATCATAGACCTTAACCACACACATTCTCTACTTGCTTCATGAATAACTATTATTTCAACATGAT
TAGATGAAGTGGCTACGATGGACTGCTTTGTAGATCTTCAAGATATGACAGTCCCCCCACATATAAACACATAGCTTGTTTGGGATCGAGCTTTGTGTGG
ATCAGATAAATATCAGCATAACCAACAAGATTTGGGCTACAATTAATATAATAAGATAAACACATATCAGTTGTCCCTTTAAGATATCGTAAAATGTGTT
TGATCTCATTCCAATGTCTCCTAGTAGGAGCAGAACTATACCTTGCTAACAAGTTAACAGTAAAAAAACTATAT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.955701
Expected error %
0.139928
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAA97087.1| Score 197 E Value 6e-60 Identity 70.80% Align. Length 562bp (97.91%) Frame 3
copia-type pol polyprotein-like [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAS79613.1| Score 186 E Value 1e-59 Identity 65.70% Align. Length 562bp (97.91%) Frame 3
putative copia-like polyprotein [Ipomoea trifida]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0125K20
Clone
Clone name
hba-125k20
LE_HBa0125K20
P125K20
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found