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Clone Read LE_HBa0196H16_T7_259690

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0196H16_T7_259690
Primer
T7
ID from Seq. Facility
LE_HBa_196_H16-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
5 trimmed for vector and quality, 1437 raw
Sequence
>LE_HBa0196H16_T7_259690 (raw untrimmed)
CTCACTCTAGGCCGACGCACTGCTAGGGCATTGCCAAGACAACTCATCATATCCTGTCTCTCGTGTGATAACAGTTGTAACGGTAGACTCGAGCGGACTG
CGACAGACGTAGCGCTGAATATTTTGAAGCGTCTTACTTACGCAGTGGATGTGTGAGCAGCAGCCGCTGCGGATGTGTAAGCTGCGCCTCTGTCATAACG
ACAAGAGAACCGTAAACTGATGGGTGTGCTAGCGCGTCCGGAACTTCGTCCGGCGTCAATAGTGGTGCACTTACTTACTCGTCGCAGCTCTCTGAAGCGN
TACACGTTGTCTAACNTTCTCTGTATCCATGTGCTACTAGGGTACGATGCTGTCACGAATCACTCTACTGTTATCTCTTCGTAGATACATTCTCCTATTT
AACAGCCATACCAGACGAGTTGATCTGTATCGCACTAGTCTTCCTATATCACTGATTGCTCCTCGAAATTCGACTCCTCATGGGCAAAAGCAGCCATATT
CCTAAACCTCCACTTCTTCTACCTTACAATATGAATAACCACATCCTTCTCTGGCAACAATAAGCATCTTATACTATCCATCCTCGAATTCTTATAATCC
TTGTACGTCGGTCACCGCCATCATCCTTCTCCAACAACTGAAATATGTTGTCGCAATGACGCTTAATTCTTGACGGGTCCCGCGTTTCAATTGCGTCCGC
TCAAGATTCGAGAGAATCCTCACCACCTATGTTTGACTTCTACGCCGTGCGCCCTCACTTTATCTACACAACTTGTCCGCGCACTCCACGCCCGAAGTTC
TCACCCCCTCCACCATCCGCCCCCCTCAATCCTCCATTCCCTCCGGCAATATTCTGCGCCCTTTACTCAATTCTGTCTAGGACTTCTCTCGGTCGTACGC
TTCCCCCACCAATAGCGATCCATTAGATCCTCCCTTCACTTCGACGTCCACACCAGCCGCACCCATTCTCACATCGCCCACAGCCTTCCCATCCTTTCTC
CCACTCTCTTCTCTTCCCCCTTTTGGCTCCTCTATTCGCCTTCTCCCTTCACCCCCAACTCCACCTCCCTCCTTTACCTCTTGTTATCCTCCCACTTCTC
TTTCTCCTCCTCTGACTTCTCCCTACCTCACCGCCCGGCCTCCTCTCCTCCATTCTCTACTTTCACTCTCCTCCCGTCTCACTTACTCCACCTCCCCATC
CTCCACATCATCTCTCTTGCCTCTCTCCTCGCCTCATTTGCTCCGTCCCCTACGGGAACTCGCCTTACTCTCTTCTCTCCTCCCCGCCATCTCCCATTAC
ACAGACTCTCCCTCCTCACATGCCCATCATCCTCTCTGTCTCTCATCTCATTCACATCTCTCTCAATAGCTTCTTCATCCCCTTCTCTCTACTCTCTATC
ATCCCCCACTCCTCTCTCTTCTCCACATCTTCCTCTC
>LE_HBa0196H16_T7_259690 (trimmed for quality and cloning vector)
CCCCC

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.542302
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0196H16
Clone
Clone name
hba-196h16
LE_HBa0196H16
P196H16
Clone type
BAC
Contamination
none
Estimated length
100,425
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found