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Clone Read LE_HBa0107P06_SP6_258800

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0107P06_SP6_258800
Primer
SP6
ID from Seq. Facility
LE_HBa_107_P06-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
699 trimmed for vector and quality, 819 raw
Genbank Accession
DU082263
Sequence
>LE_HBa0107P06_SP6_258800 (raw untrimmed)
TAATGAGCGATCCTTCTTTTCATGTTGGTACATTTCAATCTGGAAAAGGATTTGCATGCACTCCTACACATTTCAGTCACATTCACTTTATGGACCCCAG
GGGATGTTGTGAAGTGATTTTTTCATTAATCAATCTGAATCTCTGGAAAAAAATCACATGATTTTGTCTATTTAAAAAGCTGATCTTCTTTCCAGCAGCG
GCCATTTTGCCTGACTTCTTGTCTTTACAGATATCTTCTGAGGAGAAGTGCATTGGAATTATTTATGGTCGACCGGTCAAACTTTTTCTTTGACTTTGGG
GTATAACCTTGTACTACATTGTGATGATTACATGCTCTTGTTTTCTAATTTTTACTTCTTCAAGAACAAGGTGAACTTTCTTGGTTTTTGAATCAGAGTA
CTGAGGCAAGAAGAGATGCATATCGAGCTATTGTTCAAACTCGTCCCTCTCATTTGAACAATATCTACCTTGCAACTCAGGTTTCTACTTCTCTTTAGCT
TATTCATCGGTCTTTGGCATATGAACAAACTTTGTTAAGTTAGTTTGCAATATTCTGTGTGGGCTATGCTTGACACGTTGACTTGTATCCATATCCATTC
AAAAATTCACTGCACAAAAGAAATGAATCTTCATGGTCAAACAAGAAATTCTTCTTTCTTTAGCATTTCACCAATATTCTATCCCATTATCTGTTTATGT
CACTTCTCATCTTGCAGAGACCTGAACAACTTCTTAAACGAACTCCGCTTATGGAACGTTGGGCCTCCCGGGGAAGTATGTTAAAAAACGAAATTTCTCT
TTATATTTAAGTAAATGAG
>LE_HBa0107P06_SP6_258800 (trimmed for quality and cloning vector)
GGTACATTTCAATCTGGAAAAGGATTTGCATGCACTCCTACACATTTCAGTCACATTCACTTTATGGACCCCAGGGGATGTTGTGAAGTGATTTTTTCAT
TAATCAATCTGAATCTCTGGAAAAAAATCACATGATTTTGTCTATTTAAAAAGCTGATCTTCTTTCCAGCAGCGGCCATTTTGCCTGACTTCTTGTCTTT
ACAGATATCTTCTGAGGAGAAGTGCATTGGAATTATTTATGGTCGACCGGTCAAACTTTTTCTTTGACTTTGGGGTATAACCTTGTACTACATTGTGATG
ATTACATGCTCTTGTTTTCTAATTTTTACTTCTTCAAGAACAAGGTGAACTTTCTTGGTTTTTGAATCAGAGTACTGAGGCAAGAAGAGATGCATATCGA
GCTATTGTTCAAACTCGTCCCTCTCATTTGAACAATATCTACCTTGCAACTCAGGTTTCTACTTCTCTTTAGCTTATTCATCGGTCTTTGGCATATGAAC
AAACTTTGTTAAGTTAGTTTGCAATATTCTGTGTGGGCTATGCTTGACACGTTGACTTGTATCCATATCCATTCAAAAATTCACTGCACAAAAGAAATGA
ATCTTCATGGTCAAACAAGAAATTCTTCTTTCTTTAGCATTTCACCAATATTCTATCCCATTATCTGTTTATGTCACTTCTCATCTTGCAGAGACCTGA

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.946373
Expected error %
0.471915
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g45540.1 Score 81 E Value 5e-16 Identity 18.70% Align. Length 251bp (35.91%) Frame 3
68415.m05663 WD-40 repeat family protein / beige-related contains Pfam PF02138: Beige/BEACH domain; contains Pfam PF00400: WD domain, G-beta repeat (3 copies)
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g60920.1 Score 71 E Value 7e-13 Identity 16.70% Align. Length 251bp (35.91%) Frame 3
68416.m06815 beige/BEACH domain-containing protein contains Pfam PF02138: Beige/BEACH domain; similar to LBA isoform gamma (GI:10257405) [Mus musculus]; similar to beige-like protein (CDC4L) - Homo sapiens; similar to Neurobeachin: kinase A-anchoring, beige/Chediak-higashi protein homolog implicated in neuronal membrane traffic (AKAP550) (GI:11863541) [Drosophila melanogaster].
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAC06163.1| Score 81 E Value 2e-14 Identity 18.70% Align. Length 251bp (35.91%) Frame 3
unknown protein [Arabidopsis thaliana] pir||T00867 hypothetical protein At2g45540 [imported] - Arabidopsis thaliana ref|NP_182078.1| WD-40 repeat family protein / beige-related [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_191651.2| Score 71 E Value 3e-11 Identity 16.70% Align. Length 251bp (35.91%) Frame 3
beige/BEACH domain-containing protein [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0107P06
Clone
Clone name
hba-107p6
LE_HBa0107P06
P107P06
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found