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Clone Read LE_HBa0165I09_T7_255783

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0165I09_T7_255783
Primer
T7
ID from Seq. Facility
LE_HBa_165_I09-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
582 trimmed for vector and quality, 963 raw
Sequence
>LE_HBa0165I09_T7_255783 (raw untrimmed)
TACTGTCGGGGATCTCTGAGTCGACTGCAGGCATGCAAGCTTGGCGTATTCCTCCACCAAATTTGTAGTTTTAACGACCAAAAAGTGCACAAACTTAGTA
ACTCTATCAACTATAACCCAAATGGAGTCATGCTGTCTGTGAGTATGAGGTAAGCCTGTAATGAAGTCCGTATTGATCACTTCTTACTTCCAAGTACGAA
TGTTGATCTCTTGAGGCATACCTCCTGGTTTCTGATGTTCAAACTTCACTTTCTGGCAATTAGGGCACTTACCCACAAAATCCGCTTTATATTTTTCCAT
ACCATTCCACCACAAGACTTTCCGCAGGTCACAATAAATCTTAGTGGCACCTGAATAAAAAGAATATCTGGAATTATGAACTTCTGCAAGAATCTACTAT
CTCAACTCACCCACCTTAGGAACACATAATCTACCCTTATAGCGAATCACACTATTTCTCCCTTGGAAAAGAACTCAACTCTCTGCTGATGCACTATACC
CTTTAGTTGAAGTAATATCATATCATTGTCTTTATTTTCCTTAACCTCCGCTTCTAATGAAGATTCTAACCCTTTCTGAAATGCTACACCACCATTTGAT
ATGCTTATAAGACGAACTCCTAAGTGAGCAAGTCTATGGACATACTTTGCTAGTTTCGTCTTTCTTCCCCACATGTGCTACAGTACCCATAAATAGTCTA
GTAAGAAGCATATGCTACTATATTGGGACTTACCAAAATGTTAATGCCACCCTCATATCCAAATCCCTGGAGATACCCAAGCCCATCTTTATTGGTCCAA
AAATCTAACTCCTTTTTTTTGAAATTTTAAACCTGAAGGCCTGTTATGGTTCTGTGAACCTATATGACTTTAAACCCCTTTCTCATGTATGGTTTTCCAA
TTACAAAGGGCTAAAACCCTCTTTCACCACGCCTTCAGGCTTTGGGGTTGGACATATTTTTTC
>LE_HBa0165I09_T7_255783 (trimmed for quality and cloning vector)
GCAGGCATGCAAGCTTGGCGTATTCCTCCACCAAATTTGTAGTTTTAACGACCAAAAAGTGCACAAACTTAGTAACTCTATCAACTATAACCCAAATGGA
GTCATGCTGTCTGTGAGTATGAGGTAAGCCTGTAATGAAGTCCGTATTGATCACTTCTTACTTCCAAGTACGAATGTTGATCTCTTGAGGCATACCTCCT
GGTTTCTGATGTTCAAACTTCACTTTCTGGCAATTAGGGCACTTACCCACAAAATCCGCTTTATATTTTTCCATACCATTCCACCACAAGACTTTCCGCA
GGTCACAATAAATCTTAGTGGCACCTGAATAAAAAGAATATCTGGAATTATGAACTTCTGCAAGAATCTACTATCTCAACTCACCCACCTTAGGAACACA
TAATCTACCCTTATAGCGAATCACACTATTTCTCCCTTGGAAAAGAACTCAACTCTCTGCTGATGCACTATACCCTTTAGTTGAAGTAATATCATATCAT
TGTCTTTATTTTCCTTAACCTCCGCTTCTAATGAAGATTCTAACCCTTTCTGAAATGCTACACCACCATTTGATATGCTTAT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.966058
Expected error %
0.0460819
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38792.1| Score 196 E Value 7e-56 Identity 63.60% Align. Length 562bp (96.56%) Frame 3
putative gag-pol polyprotein [Solanum demissum] gb|AAT38791.1| putative gag-pol polyprotein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38790.1| Score 196 E Value 7e-56 Identity 63.60% Align. Length 562bp (96.56%) Frame 3
putative gag-pol polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0165I09
Clone
Clone name
hba-165i9
LE_HBa0165I09
P165I09
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found