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Clone Read LE_HBa0125F03_T7_253908

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0125F03_T7_253908
Primer
T7
ID from Seq. Facility
LE_HBa_125_F03-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
550 trimmed for vector and quality, 961 raw
Genbank Accession
DU081472
Sequence
>LE_HBa0125F03_T7_253908 (raw untrimmed)
CGTCGGGGATCTCTGAGTCGACCTGCAGGCATGCAAGCTTAAATGGAGTCATTTGGTAGGGAGGAATAAAAATAGGTTGGGTATCTAAAAAGATATCAAT
TCCAAAGTCGATTTCCATACCATGAGAAACTCCGGAAAGATCTTCTGGAAAAACATGAGGTACTCATTAACTACTAGGATTGACTAAAAATTTGGGGTTT
CAGAGCTTGAATCCTTAACTCGAATTAGATTATAGAAATAACACCTAGATATTATCTTCATGGCTTTTATGGTGAGAAATGAATTAACCCATAGGTGCTA
AACTACGACCCTTCCATTCTAAGATTGATTCGTTTAGAAATTAAAAATGAACAATCTTAGTTCTACAATCTATTGAGGCATAATAGGAATGTAAGCAATC
CATGTCTAGAATTCTATCGAAACCTACCATTTCTAACTTTACAAGATCTATTGAGGTAAATTTTTAGGAGATTGTGATAGGGAAATTTTTGTATATTCAT
CTAGCTATAACTGGGTCACCGACTATAGTAGAGACAGAGAAAGGTTTTGAGAAGTTTCTACATTGACACCGAAGCTGACTGCTATATAGGGAGTTACGAA
GGAAGAATTACCCCCTAGATCTAACAAAGCATCTAAATCTAAGTTAAAAACGCCAAATGTACCATTGACTATTCCATGGAGAACTTCCTGAACGTCGCGA
GGCTATTGATCATGCTTCTGAATTGGCCGCTTCAGCCCTATTAAAACAAATGGTTACCTTGCTTTACTAGAGACCCTTCTCGTCCATACTTTCTTTTGGA
GCATACTCAAATAAGAAATCCACCGTGTACGTCTATCAGAACAAGCATCATTCGCCCCTTTACACCCCCAAAAAAATTTCTCCAAAGTCTTACTCATAGG
GTTCATACAAACTCCGCAAGAATTTGCATTATTTTAGATTCGTTGAACCCTATTGTATTCC
>LE_HBa0125F03_T7_253908 (trimmed for quality and cloning vector)
TCGACCTGCAGGCATGCAAGCTTAAATGGAGTCATTTGGTAGGGAGGAATAAAAATAGGTTGGGTATCTAAAAAGATATCAATTCCAAAGTCGATTTCCA
TACCATGAGAAACTCCGGAAAGATCTTCTGGAAAAACATGAGGTACTCATTAACTACTAGGATTGACTAAAAATTTGGGGTTTCAGAGCTTGAATCCTTA
ACTCGAATTAGATTATAGAAATAACACCTAGATATTATCTTCATGGCTTTTATGGTGAGAAATGAATTAACCCATAGGTGCTAAACTACGACCCTTCCAT
TCTAAGATTGATTCGTTTAGAAATTAAAAATGAACAATCTTAGTTCTACAATCTATTGAGGCATAATAGGAATGTAAGCAATCCATGTCTAGAATTCTAT
CGAAACCTACCATTTCTAACTTTACAAGATCTATTGAGGTAAATTTTTAGGAGATTGTGATAGGGAAATTTTTGTATATTCATCTAGCTATAACTGGGTC
ACCGACTATAGTAGAGACAGAGAAAGGTTTTGAGAAGTTTCTACATTGAC

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.949705
Expected error %
0.0629618
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38724.1| Score 139 E Value 5e-32 Identity 15.80% Align. Length 512bp (93.09%) Frame 1
putative retrotransposon protein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38744.1| Score 138 E Value 9e-32 Identity 15.80% Align. Length 512bp (93.09%) Frame 1
putative gag-pol polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0125F03
Clone
Clone name
hba-125f3
LE_HBa0125F03
P125F03
Clone type
BAC
Contamination
none
Estimated length
102,467
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found