Clone Read LE_HBa0089G23_SP6_25292

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0089G23_SP6_25292
Primer
SP6
ID from Seq. Facility
LE_HBa_089_G23-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
683 trimmed for vector and quality, 877 raw
Genbank Accession
DU040110
Sequence
>LE_HBa0089G23_SP6_25292 (raw untrimmed)
GGCCATCATTTGAGAGACAATGCTCGAGGGTATTTCCAGCAGTTGATTTCTGCAATTGATTTTTGTCATAGCCGTGCTGTTTATCACAGAGATTTAAAGC
CTGAGAATTTGCTGTTACATGAAGAAGGCAATCTTAAGGTAACCGATTTCGGACTTAGTGCTTTTACTGATCATTTAAGGCAAGATGGTTTATTGCATAC
AACTTGTGGTACTCCTGCTTATGTTGCCCCTGAAGTACTTGGTAATCATGGATATGATGGTGCAACATCAGATATTTGGTCATGTGGAGTGATTCTTTAT
GTGCTTTTAGCTGGTTTTTTACCATTTCAAGATGATAATATCATGGCTATGTATAAGAAAATTCACAAGGGTGATTTCAAGTGTCCACCTTGGATGTCAT
CTGATGCAAAGAAGTTGATTGTAAAGATGTTGGATCCGAATCCGAGAACTCGAATTACTGCTTCAAAGATTATGGAGTCTAATTGGTTCAAGAAGACTGT
GCCAAGGACTTTGAGGAGTAAGGTGGAGGAAGAGTTTTCTCATGTGGGAGACGAAGATTGTGTAGGGAAGGCGAAAAAGATTGAGTCTTTGAATGCTTTT
CATATCATTTCATTGTCGGAGGGGTTTGATTTGTCTCCTTTGTTTGAGGAAAAGAAGAAGAAGGAGAAGGAACAGTTGAGATTTGCAACAACAAAGCCAG
CTAGTAGTGTGAATTCGAAGCTCGAGGAAGTAGCTAAAACCTCGAAAATTCACTTGAAAAGGAGTGATTCTAGTGTTAGATTGCCAGGGCAAGAAAGTGG
GAGGAAAGGAAATTGGGAATATCTGCTGAAATATTTGCAGTGAACCTTTCATTTCTGGGTATGGAGGATAACAACCT
>LE_HBa0089G23_SP6_25292 (trimmed for quality and cloning vector)
TGCTCGAGGGTATTTCCAGCAGTTGATTTCTGCAATTGATTTTTGTCATAGCCGTGCTGTTTATCACAGAGATTTAAAGCCTGAGAATTTGCTGTTACAT
GAAGAAGGCAATCTTAAGGTAACCGATTTCGGACTTAGTGCTTTTACTGATCATTTAAGGCAAGATGGTTTATTGCATACAACTTGTGGTACTCCTGCTT
ATGTTGCCCCTGAAGTACTTGGTAATCATGGATATGATGGTGCAACATCAGATATTTGGTCATGTGGAGTGATTCTTTATGTGCTTTTAGCTGGTTTTTT
ACCATTTCAAGATGATAATATCATGGCTATGTATAAGAAAATTCACAAGGGTGATTTCAAGTGTCCACCTTGGATGTCATCTGATGCAAAGAAGTTGATT
GTAAAGATGTTGGATCCGAATCCGAGAACTCGAATTACTGCTTCAAAGATTATGGAGTCTAATTGGTTCAAGAAGACTGTGCCAAGGACTTTGAGGAGTA
AGGTGGAGGAAGAGTTTTCTCATGTGGGAGACGAAGATTGTGTAGGGAAGGCGAAAAAGATTGAGTCTTTGAATGCTTTTCATATCATTTCATTGTCGGA
GGGGTTTGATTTGTCTCCTTTGTTTGAGGAAAAGAAGAAGAAGGAGAAGGAACAGTTGAGATTTGCAACAACAAAGCCAGCTA

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.954895
Expected error %
0.102288
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g30960.1 Score 321 E Value 3e-88 Identity 22.90% Align. Length 680bp (99.56%) Frame 3
68417.m04395 CBL-interacting protein kinase 6 (CIPK6) identical to CBL-interacting protein kinase 6 [Arabidopsis thaliana] gi|9280634|gb|AAF86505
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g01810.1 Score 268 E Value 2e-72 Identity 19.20% Align. Length 680bp (99.56%) Frame 3
68418.m00100 CBL-interacting protein kinase 15 (CIPK15) identical to CBL-interacting protein kinase 15 [Arabidopsis thaliana] gi|13249134|gb|AAK16692; identical to novel serine/threonine protein kinase [Arabidopsis thaliana] gi|1777312|dbj|BAA06311; contains Pfam profiles PF00069: Protein kinase domain and PF03822: NAF domain
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAM83095.1| Score 333 E Value 2e-90 Identity 24.10% Align. Length 680bp (99.56%) Frame 3
SOS2-like protein kinase [Glycine max]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAL37170.1| Score 323 E Value 3e-87 Identity 22.90% Align. Length 680bp (99.56%) Frame 3
CBL-interacting protein kinase [Brassica napus]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0089G23
Clone
Clone name
hba-89g23
LE_HBa0089G23
P089G23
Clone type
BAC
Contamination
none
Estimated length
109,069
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found