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Clone Read LE_HBa0089F15_SP6_25228

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0089F15_SP6_25228
Primer
SP6
ID from Seq. Facility
LE_HBa_089_F15-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
784 trimmed for vector and quality, 930 raw
Genbank Accession
DU040054
Sequence
>LE_HBa0089F15_SP6_25228 (raw untrimmed)
CCGGGCTTTGTGCGTTTGGCAAAACATATGAAATTCCAATGGTACCAATGCCAGATAAGGAAGATTGGTCAGATCCCTTACACGTGGTAGCTGAAACTGT
GTATCCACCTAGATATGGAAGATCATCTGGACGACCAAGAAAAAGAAGAAGAAAGAATGCAGATGAAAAGATTTCGGTGAACACAAACTGTTGTGGACAA
TGTGGACAAGAAGGGCACAACAGAAGAACTTGTACTTTCTACCCAAAAGAGAAGTGAATTAGTCGTAATGTTTCTATGATATCAAGAATAATTTATAACG
TAAACATTTTAATGATTTCAGTTTATATTACAAACTGCAAATTGAACACTTTGTGTTTGGATAAATAAACTTACAAACATGTGGTAATTAAATTTGAAGT
CGTGTTTTTGATTATAAATACTTTGTTATTATTGGTGTTGATAAATATACTTGTGTCAATATTTGTTTTTAATATAAAATTTTATAAATCTTATGCTACA
GTAAGATATATAAATTTTATAAATCTTATGCTACATGATACATATGGTTTATCTAGTGTATCATGTACTTTTATTGTGTGTTTTTGGTACACATTGTTTA
TCTAATGTATCATGTACTTTTAGTTTGTATCATTGATATGCACAATGATACATCTCCATTAGATAAAAAATACAAAAATATTATTGAGGTTATTGTGTAT
TTTACAATGACTATAAATCATGTATCATGTTAATTTATATAATTTAACTTGTGTAATGCTTTTTTTTGTTATGCTTTTCTTGAATATACAGTAAATAACT
TAACTTTTAAAAATATACCAATTCATATACTATGCTATTCATTTACCTAATATCTGTAAAATTTAAGGATATAGGGTAACAATTGGACCTGACCATCCGG
GTACCCATGGACAGTTTTTTAATGGGGGTT
>LE_HBa0089F15_SP6_25228 (trimmed for quality and cloning vector)
ACATATGAAATTCCAATGGTACCAATGCCAGATAAGGAAGATTGGTCAGATCCCTTACACGTGGTAGCTGAAACTGTGTATCCACCTAGATATGGAAGAT
CATCTGGACGACCAAGAAAAAGAAGAAGAAAGAATGCAGATGAAAAGATTTCGGTGAACACAAACTGTTGTGGACAATGTGGACAAGAAGGGCACAACAG
AAGAACTTGTACTTTCTACCCAAAAGAGAAGTGAATTAGTCGTAATGTTTCTATGATATCAAGAATAATTTATAACGTAAACATTTTAATGATTTCAGTT
TATATTACAAACTGCAAATTGAACACTTTGTGTTTGGATAAATAAACTTACAAACATGTGGTAATTAAATTTGAAGTCGTGTTTTTGATTATAAATACTT
TGTTATTATTGGTGTTGATAAATATACTTGTGTCAATATTTGTTTTTAATATAAAATTTTATAAATCTTATGCTACAGTAAGATATATAAATTTTATAAA
TCTTATGCTACATGATACATATGGTTTATCTAGTGTATCATGTACTTTTATTGTGTGTTTTTGGTACACATTGTTTATCTAATGTATCATGTACTTTTAG
TTTGTATCATTGATATGCACAATGATACATCTCCATTAGATAAAAAATACAAAAATATTATTGAGGTTATTGTGTATTTTACAATGACTATAAATCATGT
ATCATGTTAATTTATATAATTTAACTTGTGTAATGCTTTTTTTTGTTATGCTTTTCTTGAATATACAGTAAATAACTTAACTTT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.910625
Expected error %
0.344234
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAU90303.1| Score 86 E Value 1e-15 Identity 17.30% Align. Length 224bp (28.57%) Frame 2
putative zinc finger containing preotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0089F15
Clone
Clone name
hba-89f15
LE_HBa0089F15
P089F15
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found