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Clone Read LE_HBa0087G21_SP6_24520

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0087G21_SP6_24520
Primer
SP6
ID from Seq. Facility
LE_HBa_087_G21-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
547 trimmed for vector and quality, 825 raw
Genbank Accession
DU039727
Sequence
>LE_HBa0087G21_SP6_24520 (raw untrimmed)
GTATTCTTTTTTTATTTGTATCAAACTTCATATTTGGGCAACCCTCGGACCAGGTCCTTTGAAATCAACTTATTCAATAAAGATGAACTCACATGTTCCA
GCCTACGATGCCAGAGATCAGCATTTTCATTTTGAGCACTGAGACATGTTAAGTCATCTCCATGAGAGATTTCCAAGTTTGCCACATACATATTTTTACT
TCTGTGTGCAGTAAGAATTACCTTGTTTGTAGTTAAACTCACCACAGTGCATTTCTCAGAAGTAAACTTGACCTCATTCCCTTTGTCACAGATTTGTGAC
ACACTTAGTAAGCTGTACTTCAACCCATCCACATGGTAAACATTGTCGATTGAATCTTCAAGAGATCTTCCTACTTTCCCAACTCCCAGAATGTACCCCT
TCTTGCCATCACCAAATGAGACACCTCCTCCTTGAAGGGTCTTGAGTGAGAGGAAGTTCTTTACATCACCAGTCATATGTTTAGAGCAGCCACTATCCAT
ATACCAACATTGACTGCTGCTCCTCTCACTCACCTGCACCAAAAATCACTTGTTAAGCTTGGGAAACCCATTTCAGCTTGAGTTCCCATTAGGCAGACAA
AGGAGTCATTAGATTGTACTTGGTCCAAGATGTAAGAACTTTAATCTTTTCTTCGAAAAAGACCTAGGAATCAGGACCACACCCCCCCTCCCCAAATCTG
TGGATTTGAACTAGGCCTCGGTAGGGACCTGGTCTCCCATTTTGGCAAAATTTTGGTCTTTTAGCTTATTTATGAAATTCTTCTTAAAATAAATTTTTTC
AGGTCTATCCCTCTTACTACTTTTA
>LE_HBa0087G21_SP6_24520 (trimmed for quality and cloning vector)
TTGGGCAACCCTCGGACCAGGTCCTTTGAAATCAACTTATTCAATAAAGATGAACTCACATGTTCCAGCCTACGATGCCAGAGATCAGCATTTTCATTTT
GAGCACTGAGACATGTTAAGTCATCTCCATGAGAGATTTCCAAGTTTGCCACATACATATTTTTACTTCTGTGTGCAGTAAGAATTACCTTGTTTGTAGT
TAAACTCACCACAGTGCATTTCTCAGAAGTAAACTTGACCTCATTCCCTTTGTCACAGATTTGTGACACACTTAGTAAGCTGTACTTCAACCCATCCACA
TGGTAAACATTGTCGATTGAATCTTCAAGAGATCTTCCTACTTTCCCAACTCCCAGAATGTACCCCTTCTTGCCATCACCAAATGAGACACCTCCTCCTT
GAAGGGTCTTGAGTGAGAGGAAGTTCTTTACATCACCAGTCATATGTTTAGAGCAGCCACTATCCATATACCAACATTGACTGCTGCTCCTCTCACTCAC
CTGCACCAAAAATCACTTGTTAAGCTTGGGAAACCCATTTCAGCTTG

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.95985
Expected error %
0.552674
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAE03782.2| Score 104 E Value 1e-21 Identity 12.00% Align. Length 497bp (90.86%) Frame 1
OSJNBa0063G07.6 [Oryza sativa (japonica cultivar-group)] ref|XP_471876.1| OSJNBa0063G07.6 [Oryza sativa (japonica cultivar-group)]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAF18630.1| Score 104 E Value 1e-21 Identity 11.40% Align. Length 482bp (88.12%) Frame 1
F5J5.1 [Arabidopsis thaliana] pir||C86482 protein F5J5.1 [imported] - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0087G21
Clone
Clone name
hba-87g21
LE_HBa0087G21
P087G21
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found