Clone Read LE_HBa0005O16_SP6_2238

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0005O16_SP6_2238
Primer
SP6
ID from Seq. Facility
LE_HBa_005_O16-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
638 trimmed for vector and quality, 897 raw
Genbank Accession
DU022473
Sequence
>LE_HBa0005O16_SP6_2238 (raw untrimmed)
AAAAGGGCNTTCGAGCTCTAGTTANAANNNNNNNNNNNNANNNCNNNAANCNGCANANGGAGGGTTTATTTAATTGGTGGAAATCGTATATCCTCCACCT
GTTGAAATTGGACCCATCATTCTCCTGCTTAAGCCACCTAAAAATATGTTCTGGCTTAATGTTGCAGGTTACCATGCCAAATATGTTTGTTGTTTTTCTG
GATTATAGCTGCAGTTCTTTGCATATAGCTGGGGAAGTGCCTTCTTGGTGAAACTGTACCACACCCTTATATATCAACGGAGAGGTCTCTTGTAATCGGT
TTTTAACTGTTGTCGTTTAGTTCCCTCGAACAATTGACATAACCTTTGTTGTTCTAATAGCTTGTGTCTTAAAGCAGGGTTGTTAGCTTTCTGCACGACA
GTTATATTAAGAGTCTAGTAACTGAGGTTTCAGCATTTCGAAGAAGGAAAGGAAAGATACAGAGCTATCATTTATATGTAGTTTTGAGCTCATCGACAAG
AAATGTTACTACTTAATACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGC
GAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCTCTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGC
TTAACGTTGGCTTGCCACGCATTACTTGACTGTAAAACTCTCACTCTTACCGAACTTGGCCGTAACCTGCCAACCAAAGCGAGAAAAAAACATAACATCA
AACGAATCGACCGATTGTTAAGTAATCGTCACCTTCACAAAAACCAACTTCCCTGTAAACCGTTTGGCATGCCTATCTTTTATTTTGTTCGGGGCAA
>LE_HBa0005O16_SP6_2238 (trimmed for quality and cloning vector)
GAGGGTTTATTTAATTGGTGGAAATCGTATATCCTCCACCTGTTGAAATTGGACCCATCATTCTCCTGCTTAAGCCACCTAAAAATATGTTCTGGCTTAA
TGTTGCAGGTTACCATGCCAAATATGTTTGTTGTTTTTCTGGATTATAGCTGCAGTTCTTTGCATATAGCTGGGGAAGTGCCTTCTTGGTGAAACTGTAC
CACACCCTTATATATCAACGGAGAGGTCTCTTGTAATCGGTTTTTAACTGTTGTCGTTTAGTTCCCTCGAACAATTGACATAACCTTTGTTGTTCTAATA
GCTTGTGTCTTAAAGCAGGGTTGTTAGCTTTCTGCACGACAGTTATATTAAGAGTCTAGTAACTGAGGTTTCAGCATTTCGAAGAAGGAAAGGAAAGATA
CAGAGCTATCATTTATATGTAGTTTTGAGCTCATCGACAAGAAATGTTACTACTTAATACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTT
AAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCTCTTT
ACCAATTCTGCCCCGAATTACACTTAAAACGACTCAAC

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.970305
Expected error %
0.299465
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAS58792.1| Score 117 E Value 2e-25 Identity 32.70% Align. Length 170bp (26.65%) Frame 2
envelope glycoprotein [Human immunodeficiency virus 1]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAS58790.1| Score 117 E Value 2e-25 Identity 32.70% Align. Length 170bp (26.65%) Frame 2
envelope glycoprotein [Human immunodeficiency virus 1]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0005O16
Clone
Clone name
hba-5o16
LE_HBa0005O16
P005O16
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found