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Clone Read LE_HBa0082G11_T7_21429

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0082G11_T7_21429
Primer
T7
ID from Seq. Facility
LE_HBa_082_G11-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
583 trimmed for vector and quality, 933 raw
Genbank Accession
DU038271
Sequence
>LE_HBa0082G11_T7_21429 (raw untrimmed)
ATAACCTCGGTCCCGGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTATATGACGATTTCGGATTAAAACTAACTTATACCTAGGCACCAGCTA
TATGAGTATTGATTTGTGCTGGTGGCGGCGGCATGCAGGATTTTTTTAAAAAACATGGTGTGGCTGTTATGACAATCCGAGAGTTGTTTGATTTTATAGT
TGATCCAACTATCAATGATGATTCAGTGGATAGCTATTTGGAGAAGGTATGGCTCATACATGTATTGGATGATCGAATGCATGCTAAATGTTGATTCAAA
TTCTTTTATATTCAAATGACTTGGAATCCTTAACTTGCTGTTTCCCCACTATATGCTAGGTTCAAGAGAGAATTTTGGCTAGAGGTGACATGACTGCAGA
AGAAGAAATTGCCGACTCTGTATTTATTCAGGTATTATTTCTGCTAGGTATTTGAACTACTTTTTTGTTTCCATTAATAAAAGGTCAAGGCAAACTTTTG
ACTTGTGGTCAGATTGTACTTGCAATATTCATCGACGTCCCAAAAATAACGAAGGGAATATAGATTGGAATGTTGAAAAAATAGTGTTGTGTTAATATGC
CTAAACATTGGTCATATCTAGGGAACTGCTGCCCTATTACGGATGCACTATGTTTTCATCTGTGGGTATTGCCTTGCTTGATAAATTTGTTCACACACCT
CAGGGGGATTTCTCAGATCTTTCCCCCTCCCAGCATAGTCTTTCCCCTTCACTCCCCATCTTTTGCCTGTTATCCCTTTTATCCCATTCACTGGATCTTA
TGATATATCTTCAAACTTATTTTCCTCTCATCATACGACCTCAACGCCCCGGACCCCCTACACACACCATCTTTCACGTCTAAGATAGCTGCTATACTCG
TCGCATCTATCTCGACCCCTACCCCACCGCCGC
>LE_HBa0082G11_T7_21429 (trimmed for quality and cloning vector)
AGCTTATATGACGATTTCGGATTAAAACTAACTTATACCTAGGCACCAGCTATATGAGTATTGATTTGTGCTGGTGGCGGCGGCATGCAGGATTTTTTTA
AAAAACATGGTGTGGCTGTTATGACAATCCGAGAGTTGTTTGATTTTATAGTTGATCCAACTATCAATGATGATTCAGTGGATAGCTATTTGGAGAAGGT
ATGGCTCATACATGTATTGGATGATCGAATGCATGCTAAATGTTGATTCAAATTCTTTTATATTCAAATGACTTGGAATCCTTAACTTGCTGTTTCCCCA
CTATATGCTAGGTTCAAGAGAGAATTTTGGCTAGAGGTGACATGACTGCAGAAGAAGAAATTGCCGACTCTGTATTTATTCAGGTATTATTTCTGCTAGG
TATTTGAACTACTTTTTTGTTTCCATTAATAAAAGGTCAAGGCAAACTTTTGACTTGTGGTCAGATTGTACTTGCAATATTCATCGACGTCCCAAAAATA
ACGAAGGGAATATAGATTGGAATGTTGAAAAAATAGTGTTGTGTTAATATGCCTAAACATTGGTCATATCTAGGGAACTGCTG

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.949837
Expected error %
0.881737
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g37350.1 Score 72 E Value 4e-17 Identity 84.60% Align. Length 298bp (51.11%) Frame 2
68418.m04486 RIO1 family protein similar to extragenic suppressor of the bimD6 mutation (SUDD) [Emericella nidulans] GI:2338556, RIO1 [Saccharomyces cerevisiae] GI:1359602; contains Pfam profile PF01163: RIO1 family
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g37350.2 Score 72 E Value 4e-17 Identity 84.60% Align. Length 298bp (51.11%) Frame 2
68418.m04487 RIO1 family protein similar to extragenic suppressor of the bimD6 mutation (SUDD) [Emericella nidulans] GI:2338556, RIO1 [Saccharomyces cerevisiae] GI:1359602; contains Pfam profile PF01163: RIO1 family
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAD12556.1| Score 77 E Value 2e-20 Identity 92.30% Align. Length 298bp (51.11%) Frame 2
RIO kinase [Nicotiana tabacum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAM65700.1| Score 72 E Value 2e-15 Identity 84.60% Align. Length 298bp (51.11%) Frame 2
similar to extragenic suppressor of bimD6 mutation {Emericella nidulans} [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0082G11
Clone
Clone name
hba-82g11
LE_HBa0082G11
C08HBa0082G11
P082G11
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found