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Clone Read LE_HBa0005M05_SP6_2120

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0005M05_SP6_2120
Primer
SP6
ID from Seq. Facility
LE_HBa_005_M05-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
778 trimmed for vector and quality, 920 raw
Genbank Accession
DU022363
Sequence
>LE_HBa0005M05_SP6_2120 (raw untrimmed)
TACTGTGAGCTATTTATAAAGGAGCATCAAATTTTATATTTACATTACTATTAACAAATTTCATGCAATAATACTATTACATACTTGAGAGTTGAGAGTT
GAGAGTCATATAACAACAAACGCATCATATTATAAATGGAAATATAGAACATAAGTTGAGTGAGTGCATTCATAGGTTTCTCAAGTTTTTCAACTTGGGA
TTAATAAATGATGGAGCATTTTTTTTTATGAAATATAAAAACTTGGATAAACTTAAAATTTTAAAAATTCCCAAAAATTTAAGGTATGTGTACTACTTGG
GGCAATGAGGGAATATGACACTTGTGGTGCAACCTCTTATATAGATGTGTTCCAAATTAATGTTAGATTTAAGTATATCTACGTTCGTGCACTTTCAATT
GCCTTTAAATGTAAGCAATTACATTTCTCTCTTGCATTAGCACTGTATCCAAACCAGAATAAGATACATCACAATACACAATAAAATTCTTACCTTCCAC
TGGCAAGGCAAGAATCAGAGCAGTAGTCAACAAGCTCTTGAGTTTCAGGAAGCTTTCTTCACACTTATTTGACTATACAAATGGAACATTCTGCTTAGTC
GAATTGATCAGATGGGAAGCAATGGAAGAGTATCCCTTGACGAATTGACGTAGCAGCTAGCTAAACTAATAAAGTTTTTTACCTCTAAAACATTAGTAGG
TCTTACCCAATTCTTCACTACTTCAATCCTAGTGGGATCCACCATCACTCCCTCCTTAGAAACCACGCGTCCTAAGAAGGACACTGAATCAAGCCAAAAT
TTACACTTTGGAGAATTTGGCATAAAGCCTTTTTCTCCCATAACAACCTCAGTACGAATTTTTAAATGCCTCCTTCATGTTTCCCCTCCTAACTTTTTTG
AAATAAAATTAAAATATATT
>LE_HBa0005M05_SP6_2120 (trimmed for quality and cloning vector)
AAAGGAGCATCAAATTTTATATTTACATTACTATTAACAAATTTCATGCAATAATACTATTACATACTTGAGAGTTGAGAGTTGAGAGTCATATAACAAC
AAACGCATCATATTATAAATGGAAATATAGAACATAAGTTGAGTGAGTGCATTCATAGGTTTCTCAAGTTTTTCAACTTGGGATTAATAAATGATGGAGC
ATTTTTTTTTATGAAATATAAAAACTTGGATAAACTTAAAATTTTAAAAATTCCCAAAAATTTAAGGTATGTGTACTACTTGGGGCAATGAGGGAATATG
ACACTTGTGGTGCAACCTCTTATATAGATGTGTTCCAAATTAATGTTAGATTTAAGTATATCTACGTTCGTGCACTTTCAATTGCCTTTAAATGTAAGCA
ATTACATTTCTCTCTTGCATTAGCACTGTATCCAAACCAGAATAAGATACATCACAATACACAATAAAATTCTTACCTTCCACTGGCAAGGCAAGAATCA
GAGCAGTAGTCAACAAGCTCTTGAGTTTCAGGAAGCTTTCTTCACACTTATTTGACTATACAAATGGAACATTCTGCTTAGTCGAATTGATCAGATGGGA
AGCAATGGAAGAGTATCCCTTGACGAATTGACGTAGCAGCTAGCTAAACTAATAAAGTTTTTTACCTCTAAAACATTAGTAGGTCTTACCCAATTCTTCA
CTACTTCAATCCTAGTGGGATCCACCATCACTCCCTCCTTAGAAACCACGCGTCCTAAGAAGGACACTGAATCAAGCC

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.954781
Expected error %
0.048147
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT66771.1| Score 108 E Value 2e-36 Identity 60.90% Align. Length 418bp (53.73%) Frame 2
putative polyprotein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38745.1| Score 107 E Value 5e-37 Identity 59.80% Align. Length 418bp (53.73%) Frame 2
putative polyprotein, 3'-partial [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0005M05
Clone
Clone name
hba-5m5
LE_HBa0005M05
P005M05
Clone type
BAC
Contamination
none
Estimated length
132,680
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found