Clone Read LE_HBa0005K24_SP6_2062

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0005K24_SP6_2062
Primer
SP6
ID from Seq. Facility
LE_HBa_005_K24-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
713 trimmed for vector and quality, 854 raw
Genbank Accession
DU022309
Sequence
>LE_HBa0005K24_SP6_2062 (raw untrimmed)
CCCTGGCTATGTACATTATTCAGAAATTAAAATGTGTGGCTTACCTCAATTTCAGCACGTGGAGTAAGGGCTGAGACTTTATCAATGCAAATGAGATCTA
CGGCACCTGATCTACACATCCTGTCTGCGACTGAGATAGACAAAAGTTTGGTTGAAAGTACAAACTCTAGTAAGACCACCATGATTATTGACAAGGTTGC
TAGCACAAAAAACTGAAAAATCATTTCTAATGGTGTAAACAAGGAAAAGTTGTTACTTTCTAGAGCCATCTCTCCATTATCAGGCTGGCAGACGATCAAA
TTCTCTACATCTACTCCAAGTGCTTTGGAGTATGCAGGATCAAAAGCATGCTCAGCATCAACAAGCATTGCATTGCCTCCTAGCTTCTGCATAACAATAT
TTAACATTTTATAATCTGTCTCCTTTTACATGAGAACATTTTCAGTAATAAGCCTAAGGCAAGTGGTTTCAGTGGATTGGTCACAATAATAAAGCTCCAA
TGGATGCTGGAAAGGATTCTAAGTTTGCTTTCTAGACTTCCAAATTGTCCATTATTTTCTTTCACTTCATCTGTAAGATAGAAGCATATGACTTCCTTTT
TCATCCAAACAATCAAATGCCCCCTCCCCTTCCAAGTGCAGCCCCATGCCTATAGAAGTTCCAAGCTGATGAGTAGAATAAACCAAACACATACTGCACC
TGTACTTCTGCAATAGCATGGAGAGCTAAGGTAGTCTTTCCACTACTTTCGGGCCCATATATCTGTAAAGAAAAATTATGAGGAAAGCAATTTGAACAAC
AAATTGCAGCCACCCTTGTTATTATCCCACATGCTTCACATTCAGTTGAAAAAT
>LE_HBa0005K24_SP6_2062 (trimmed for quality and cloning vector)
GAAATTAAAATGTGTGGCTTACCTCAATTTCAGCACGTGGAGTAAGGGCTGAGACTTTATCAATGCAAATGAGATCTACGGCACCTGATCTACACATCCT
GTCTGCGACTGAGATAGACAAAAGTTTGGTTGAAAGTACAAACTCTAGTAAGACCACCATGATTATTGACAAGGTTGCTAGCACAAAAAACTGAAAAATC
ATTTCTAATGGTGTAAACAAGGAAAAGTTGTTACTTTCTAGAGCCATCTCTCCATTATCAGGCTGGCAGACGATCAAATTCTCTACATCTACTCCAAGTG
CTTTGGAGTATGCAGGATCAAAAGCATGCTCAGCATCAACAAGCATTGCATTGCCTCCTAGCTTCTGCATAACAATATTTAACATTTTATAATCTGTCTC
CTTTTACATGAGAACATTTTCAGTAATAAGCCTAAGGCAAGTGGTTTCAGTGGATTGGTCACAATAATAAAGCTCCAATGGATGCTGGAAAGGATTCTAA
GTTTGCTTTCTAGACTTCCAAATTGTCCATTATTTTCTTTCACTTCATCTGTAAGATAGAAGCATATGACTTCCTTTTTCATCCAAACAATCAAATGCCC
CCTCCCCTTCCAAGTGCAGCCCCATGCCTATAGAAGTTCCAAGCTGATGAGTAGAATAAACCAAACACATACTGCACCTGTACTTCTGCAATAGCATGGA
GAGCTAAGGTAGT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.963078
Expected error %
0.275227
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g79050.1 Score 124 E Value 4e-29 Identity 20.10% Align. Length 347bp (48.67%) Frame 3
68414.m09217 DNA repair protein recA identical to DNA repair protein recA, chloroplast [Precursor] SP:Q39199 from [Arabidopsis thaliana] ;contains Pfam profile: PF00154 recA bacterial DNA recombination protein
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g19490.1 Score 67 E Value 1e-11 Identity 11.60% Align. Length 344bp (48.25%) Frame 3
68415.m02278 recA family protein contains Pfam profile: PF00154 recA bacterial DNA recombination protein
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
pir||A46259 Score 124 E Value 2e-27 Identity 20.10% Align. Length 347bp (48.67%) Frame 3
recombination protein recA homolog - Arabidopsis thaliana (fragment) gb|AAA32855.1| replicase
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAM45008.1| Score 124 E Value 2e-27 Identity 20.10% Align. Length 347bp (48.67%) Frame 3
putative replicase [Arabidopsis thaliana] gb|AAK92822.1| putative replicase [Arabidopsis thaliana] ref|NP_565198.1| DNA repair protein recA [Arabidopsis thaliana] gb|AAC17051.1| Match to nuclear-encoded chloroplast DNA repair protein (E. coli recA homolog) gb|L15229. [Arabidopsis thaliana] gb|AAA61781.1| DNA repair protein pir||T01050 hypothetical protein YUP8H12R.33 - Arabidopsis thaliana sp|Q39199|RECA_ARATH DNA repair protein recA, chloroplast precursor (Recombinase A)
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0005K24
Clone
Clone name
hba-5k24
LE_HBa0005K24
C12HBa0005K24
P005K24
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found