Clone Read LE_HBa0079O22_T7_20299

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0079O22_T7_20299
Primer
T7
ID from Seq. Facility
LE_HBa_079_O22-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
765 trimmed for vector and quality, 901 raw
Genbank Accession
DU037441
Sequence
>LE_HBa0079O22_T7_20299 (raw untrimmed)
AGGCCCGGGTCCCGGGGGGTCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTTTACATATGAAACTAGTTCACGGATGAGCAAGAGGTTTGATCACGAT
TTCTGGTAGGAGTGATTCTATATGATAAATCTCTTAAATATAGATTTCTAGTCAGTAGAATATAGAGAGGATTTCTAGTTTCAGAGAGACTGTTATTAGA
ATGGAATGGTCCTAAATGTACCAAATTGATACTGAGAATCAACATAGCCAACCCCGACTAGTTTGGAATTGAAGCATATAGTTCTTATTGAGTTGTTTTG
TTGTAGTGAACTTCTGTCGCTTTCAGCTATCCTTGAAATCCTTTGTATAAACTATGATCTCTGAATTGTTCTCCGCAAAAATGTATTTAATTATTAAAGA
ACTTGATTGGTTGTGTTGCTTGAGTACACCTTTCTATCCTACATTAGTGGAATTTTTTCTTTTAGCTTCTTTTGGTAGAATTCCTAACATTTTATGTATT
GCCAAAGCTTCCTAGGAATTGGATGCACTTGCATTTCTTGCGTGCAATTGGAATTGCCATGTCCATGAGAGCAGGAATTGCTGCAGATTCTGCAGCAGCT
TTACTTTTCCGAGTACTTTCTCAACCTGCTTTGCTTTTCCCCCCCTTGAGGCAAATTGAAGAAATTGAAATTCTGGGTGGCGACACTTCATGTAATAAAA
AGCAGGTACATCCGTCAGTTATGATTGTTGAGTTTATCTATGTGCTAGTTCTTTCTGTGGATTTCTTCTTTTATTGGATATATATGTTTGGCGTATGTGA
TTACCATTTTTATTATTCTTCAGAGAGAAGTGACTGCTGCAGAAGCACAGTAGAACCACCGCCCCAAGGGATGCTTCAATGCTTTGTGCCCATGGTCCGG
A
>LE_HBa0079O22_T7_20299 (trimmed for quality and cloning vector)
AGCTTTTTACATATGAAACTAGTTCACGGATGAGCAAGAGGTTTGATCACGATTTCTGGTAGGAGTGATTCTATATGATAAATCTCTTAAATATAGATTT
CTAGTCAGTAGAATATAGAGAGGATTTCTAGTTTCAGAGAGACTGTTATTAGAATGGAATGGTCCTAAATGTACCAAATTGATACTGAGAATCAACATAG
CCAACCCCGACTAGTTTGGAATTGAAGCATATAGTTCTTATTGAGTTGTTTTGTTGTAGTGAACTTCTGTCGCTTTCAGCTATCCTTGAAATCCTTTGTA
TAAACTATGATCTCTGAATTGTTCTCCGCAAAAATGTATTTAATTATTAAAGAACTTGATTGGTTGTGTTGCTTGAGTACACCTTTCTATCCTACATTAG
TGGAATTTTTTCTTTTAGCTTCTTTTGGTAGAATTCCTAACATTTTATGTATTGCCAAAGCTTCCTAGGAATTGGATGCACTTGCATTTCTTGCGTGCAA
TTGGAATTGCCATGTCCATGAGAGCAGGAATTGCTGCAGATTCTGCAGCAGCTTTACTTTTCCGAGTACTTTCTCAACCTGCTTTGCTTTTCCCCCCCTT
GAGGCAAATTGAAGAAATTGAAATTCTGGGTGGCGACACTTCATGTAATAAAAAGCAGGTACATCCGTCAGTTATGATTGTTGAGTTTATCTATGTGCTA
GTTCTTTCTGTGGATTTCTTCTTTTATTGGATATATATGTTTGGCGTATGTGATTACCATTTTTA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.946009
Expected error %
0.617272
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g22770.1 Score 91 E Value 7e-19 Identity 22.10% Align. Length 203bp (26.54%) Frame 3
68414.m02845 gigantea protein (GI) identical to gigantea protein SP:Q9SQI2 from [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT97405.1| Score 91 E Value 3e-17 Identity 22.10% Align. Length 203bp (26.54%) Frame 3
gigantea [Arabidopsis thaliana] ref|NP_564180.1| gigantea protein (GI) [Arabidopsis thaliana] gb|AAF00092.1| GIGANTEA [Arabidopsis thaliana] emb|CAB56039.1| gigantea protein [Arabidopsis thaliana] sp|Q9SQI2|GIGAN_ARATH GIGANTEA protein
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT97404.1| Score 91 E Value 3e-17 Identity 22.10% Align. Length 203bp (26.54%) Frame 3
gigantea [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0079O22
Clone
Clone name
hba-79o22
LE_HBa0079O22
C12HBa0079O22
P079O22
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found