Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

Clone Read LE_HBa0174M11_SP6_202953

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0174M11_SP6_202953
Primer
SP6
ID from Seq. Facility
LE_HBa_174_M11-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
513 trimmed for vector and quality, 817 raw
Sequence
>LE_HBa0174M11_SP6_202953 (raw untrimmed)
CGCCGAGGTTACACGCCTGAAAGATATCTAGCACGCATGCCAGAATCTGTCTCCCAAGTTGCCTCCCCCGCAGATCGGTGCTTCCATTGCACTTTCACTG
AAGCAATATCCTTGGCACTAAGCTTTCGAACCTGTCTATCCAAAATAGCTATAGGCTCTTCCTCAAATGTCAAGTCTGGACCCAACTCCACGGAGTCAAG
TGAAAGCACATGAGATTCATCCGAAATATACTTTCAAAGCATAGAGACATGGAAAACAGGATGAACTGCTGACAAACTAGGTCGCAAGGACAACTTATAG
GCCACTTCTTCTACTCGGCTTAAAATCTCAAAAGGTCCAATGAACCTAGGGCTAAGCTTTCCCTTCTTTCCAAACCTCATCACACCCATTTTTGGGTCGT
GACAAAATGGTATCAGAGCCTCAGGTTCATAGGTTTCACGTGTATACAAGCCGATTCTACGTAGAGTCTCAAGGATCAGTACGGAGACGTCTGTACTTAC
CTCTGAGAGGCTATAAAGATTACTAGGAAACTTTGATTTGTTCATTCTTTCTCATCGTGCATAACTACCTTACTTAGTACTGATATTGTTGTATACTCTT
TTGACAGATGACAAGAACTAGAACTAATGTTACTGGTGGTAGAAGGGAGATACTTCCAGAGGCAGTTGTTGAGGCCCCCGCTTAGGGGTTGGGGTAGATC
TCCAGCTAAAGGTCATTGCGATAGTACCACCCGTGTCCTTATTTTTTTGTATTTGTTTTTTTTTTACTATAAAAAGTCTTTGTTTATTAAGGTTCTATTT
TATGAAACTTTTATAAT
>LE_HBa0174M11_SP6_202953 (trimmed for quality and cloning vector)
TCTCCCAAGTTGCCTCCCCCGCAGATCGGTGCTTCCATTGCACTTTCACTGAAGCAATATCCTTGGCACTAAGCTTTCGAACCTGTCTATCCAAAATAGC
TATAGGCTCTTCCTCAAATGTCAAGTCTGGACCCAACTCCACGGAGTCAAGTGAAAGCACATGAGATTCATCCGAAATATACTTTCAAAGCATAGAGACA
TGGAAAACAGGATGAACTGCTGACAAACTAGGTCGCAAGGACAACTTATAGGCCACTTCTTCTACTCGGCTTAAAATCTCAAAAGGTCCAATGAACCTAG
GGCTAAGCTTTCCCTTCTTTCCAAACCTCATCACACCCATTTTTGGGTCGTGACAAAATGGTATCAGAGCCTCAGGTTCATAGGTTTCACGTGTATACAA
GCCGATTCTACGTAGAGTCTCAAGGATCAGTACGGAGACGTCTGTACTTACCTCTGAGAGGCTATAAAGATTACTAGGAAACTTTGATTTGTTCATTCTT
TCTCATCGTGCAT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.982931
Expected error %
0.760581
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT66771.1| Score 154 E Value 1e-36 Identity 21.70% Align. Length 344bp (67.06%) Frame 3
putative polyprotein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAV31169.1| Score 153 E Value 2e-36 Identity 21.70% Align. Length 344bp (67.06%) Frame 3
putative polyprotein [Solanum tuberosum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0174M11
Clone
Clone name
hba-174m11
LE_HBa0174M11
P174M11
Clone type
BAC
Contamination
none
Estimated length
93,743
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found