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Clone Read LE_HBa0174A02_SP6_202359

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0174A02_SP6_202359
Primer
SP6
ID from Seq. Facility
LE_HBa_174_A02-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 1128 raw
Sequence
>LE_HBa0174A02_SP6_202359 (raw untrimmed)
ATAATCTGCATACAGTTCTGTGCTTGTTTCTCTGTCTGTTATCTTTGTGTCGTTCAACTTACTTAGTATATATTTGTGTAGTAATTGCATTTCAGGCAAA
CGGACCTCGTTCTCTAGGTTATCCGCCGTATTGGGTTGGAGGTATGGCGTGCCGGTGGCGCATCCGTCTGTGTGTGCGTGCCGTCGCACACGACGTGCGT
GACTGTGGGGCAACTGGATGAATAGTGTGGAAAGGAGGGCTGACGAGACGAAAGAACAATGAACTTTCGATACATTTATAGTTGTAGTGCATGTGAATAA
GAGGGTAGCCTTCGAGCGGCAGGTTCGTTGCGGCATGACACCCCCATCTTCTGTTTACTGGGTGGTGCTGGCATTATTTGCTTGGTTGGCTAGATCTGCT
TTTGTTCTTCTACTGTTTTATCTCGTCTTCAGTCACTATTCTTCGATCAATCACCCCTCTCGTCCTATATGTTGTTTTTTCTATCTTTAACCGTGTTCAC
TCTTGCTCTGGCTATGTTTCTTTGCTTCTTTCTTTTGTGATCATGTCGGCGGTGCAGGTCTGGCATGGTGAGCTTCTACGATGATAGGAGCTATACGCTA
AGTTATGTGAAATGTCTTGTTCGCGTATTTTGTGATTATGATTTGATACTACTGTGTTTAGTAACGTACTGGATCTAATAAGTGATATATTCAGATGTTA
GTGATAATAGTTGGGATAACGGATGTATTCAACATTACTGATATCTGTGCGGATTATGAGCCGCTGCCGTATCTGAAATTTTTTTTACCTTATAGAGTTC
TTAGCTGATTTTACTTTGTTTGTGTTGTATCGAATAGAGAGCAGGAGACATACATAATCTGGTATGTAAAAATACCCGTACCGTGTAAGATTTCTTTACA
TTGATGTTGTCGTGATGTATCATATAGTCATTTCTTGTGAGTGGTTGATTTAATTCGAGGGGTCGAGGATGGAAGGTGTGTGGCACACGGTAAATTTGAG
GCCGGCCATGCGGTGTTGTTTGTGCTTAGTGAAGTAGTTTGTCGGGGTGATGTAGCTGAATTCGGTGCTTCATTATAGTTACTTAATGTTATGTCATGCT
ACTGAGGATGTTATATATGTTAAAGCTN
>LE_HBa0174A02_SP6_202359 (trimmed for quality and cloning vector)
TG

This is probably not a useful sequence.

Problems:
  • Low complexity
  • High predicted error rate
  • Short cloning insert
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
4.22223
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0174A02
Clone
Clone name
hba-174a2
LE_HBa0174A02
P174A02
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found