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Clone Read LE_HBa0161K19_SP6_201721

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0161K19_SP6_201721
Primer
SP6
ID from Seq. Facility
LE_HBa_161_K19-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 988 raw
Sequence
>LE_HBa0161K19_SP6_201721 (raw untrimmed)
AGTACGTGTCATGCTACTTACTCACGTAGGAGTGAGGGCGCCCTCCTCTATATTAGAGGTGATTTACAAGCTACAGTGTCTCTATTTGGTTTNTCTGTTG
TTNAGGTGTGCTTGGCTGACACTTCTCATACGCGGAGTTGGCTACTGATACGCACCTGCTTCTTGACAACAGATATTTCAACGANGGATTCACTACGTTG
GTCGGGATGTTATTGTAGTGTGCATCCCAGTAATATCGATAANTGCTGACTTTATCTGCGCGTCAGTTGGTNTCCGTGTCGTCTTGGAACTCGCCTATCT
CGCATTNCTCCCGCACTCTATGAAAACATGTAGCATAACATGCTGCCNTGTGCCTCGCTTNGCTTTGACTGCGGACGGGTGCCTTGCCGAGTCACTATAG
ACATGCATCGATCTGACCTATGAGCGCAAGTCAANAAGTACTAACTTGTATTGAACTTCATCGTCAAACTACCTCTCTACAGTGTTCTTCTGACTTATAT
TTCATGTAATGGTCTTNCGCTCTGCGTATTCTTCTCGATCTCCCTCATAGCAGAGGCCTTCACGCACGACATGCAGCCTACACTCATTCGGAGTTCACAC
CCCACATTTGTCTGAGTCTAATGCGTCCTCGTAATCCTGTTGTTTTCGTATTCACTCGTTCTGCCTGAGNATAATCGACCGACACTACACACATCCTGTN
CGTCGAACACGTGATGCTATTTGGAGAGGCTTGTTGAGTGAGGAGTAGCCATTGCAGAGATGCACGGGTTACGGTGCGAGTTCGCTCNACATGTGCTACA
ATGACGAATGATNTTACACTAGACCCACTCCCATTCTCCCTCTCTTAATATCTTGACACATGCTGTCTCTGCCGGCCAAGGGTCTGTGGCTGATCGATCG
ATATTGCTCCTTGTCGATTCATTAACACGACTCAAGAAATTTTTCATTCTTCAGTGTTTGTGTTTTCGGTGCTCTCTTACATGGCTTT
>LE_HBa0161K19_SP6_201721 (trimmed for quality and cloning vector)
AA

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
  • High predicted error rate
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
3.55195
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0161K19
Clone
Clone name
hba-161k19
LE_HBa0161K19
P161K19
Clone type
BAC
Contamination
none
Estimated length
35,348
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found