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Clone Read LE_HBa0161C09_SP6_201317

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0161C09_SP6_201317
Primer
SP6
ID from Seq. Facility
LE_HBa_161_C09-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 881 raw
Sequence
>LE_HBa0161C09_SP6_201317 (raw untrimmed)
ACGCCCCATACTCTTCATGAGGGGGACTCACTCTGCTTACGTGTGTGATACGCTAGCACAGCCGGAGCGAATAAATCATACCTGGCACCACCCCATCACC
AAAAGGAGGAGAATCACGTGGTCCCACTCGATCCCAGGACTTCAGTCGGCGTGAGGCTTCCATTACCACCTCCCTAACACCGTCCCTGCACTTTTTGTTC
GGAATTTAATTATCTCTCTGTACATTAGCTTAATTCTCACTCTTCGTTTTCTTCATACTAGATATGCATAGCACAATGAGCAGCACCTATAGTACTCTAC
TGACACCACGAGAGTCACGTTCACACTGCTCTTTGATCTACGACTTCTCGCATCTAGCTCTCTGAATGTTATCNAGGACTACGCTAACGACATGGAATAT
ACGTCTCTGTCGAGCGAATCAACCTAGCTACACGGGTAATCGCAATGCACAAACTGAAATCCCTCTTCGCAGATGATGCAAGACACTGTGACGACACCCC
CCTTCGTTATNGATCTCTGATCAGACAGCTCACCGTAGTGAACTAGACTTC
ATAACCATATTGCCATACTAGAAAACACAACTACTATACACCATCAACC
AAGGTAACCCTCCAGATACACATAGCCACTACAACTCTACCCGCATACGACTGACCAATAGGCTGCGCTCTACACCGGCATCGCTGTCTATTACCGCGCA
GTTGTACTCCTTCCCGTCACTTTCATTTTACAATCTCACCTCTCCATCCCGCCACCTCCCCTCCCACACCACTGACCACTTCACACAAGGAACGATCTCG
CTAAATACAACGCACAGCATCAACCCATAACACCACCTCAACTAAACACACGCACGCACACACACAACGACGCACACACAC
>LE_HBa0161C09_SP6_201317 (trimmed for quality and cloning vector)
AT

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.944941
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0161C09
Clone
Clone name
hba-161c9
LE_HBa0161C09
C12HBa0161C09
P161C09
Clone type
BAC
Contamination
none
Estimated length
84,437
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found