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Clone Read LE_HBa0155L18_T7_201000

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0155L18_T7_201000
Primer
T7
ID from Seq. Facility
LE_HBa_155_L18-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
509 trimmed for vector and quality, 898 raw
Sequence
>LE_HBa0155L18_T7_201000 (raw untrimmed)
GCCAACCGGGTCCGGGGGGACCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGTCGATTTTTGAAGATGCAAGCCTTTTAGATCTCATCTTGCTTTACTA
CTATGCAGTGACTACCTTCAAATTATCTTCGTATGCAAATCTGATGAGAATTTGACATTCCGCTGTCCAAAAATGAAACTTATCCATGTTCTAAATGGTA
ATCCGGACATGCATTTCTTGTGTACTTTCAGGACACAATATGCTATACTAAAAGAAGAATGCCGCACAATGTTTCCAGTGATTGGAAGTGGTCGATATAT
TACTGCACCTGTAATAACAGAAGACGGTGATCCTATTCTAGATCCTTTAGTACTTCAAGAGGCAAAAGCAGCAAAAGAAGCAAAAGAAGCTACTTCAGGC
AGTCAAGGAAATGGTAATCATGACGATGTAGAGTTCTCAACTTGTGTCCTCTCCATTCTCTTCTCTCTTTTTTCTTGTGTATGGCTGTCAGGTCGTTGAA
TGCTTCATGACGTAGAATTTAATCCTCTATTTTTCCATGCTGCAACAGGTGCTTCCCGATGATTATGAAATGGTAAAGGAGGTAACAAAACATTAATAAA
GAGGAAAATCAAGTTCACCAGATTGGACCGATTATAAGAAACTTAATAATTAATTCAATATCTATATACTCTCTTACTATATAAACCTACTTCTATAATT
TACATACAAATGATACTACTAATATAAAGGAAGATATGAGAGTATATCTATAGATGTTTCACAACAGACTAAATTGACAAAGACATACATCAGATTGTAA
AGCATAACAACCTACAAAAGCAAAATCAAAATAGTATAAACACAACCCAGAAATACTACATGCTTTCAAGAATAGGATTTTGTTTGTGTGAATTACTT
>LE_HBa0155L18_T7_201000 (trimmed for quality and cloning vector)
AGCTTGTCGATTTTTGAAGATGCAAGCCTTTTAGATCTCATCTTGCTTTACTACTATGCAGTGACTACCTTCAAATTATCTTCGTATGCAAATCTGATGA
GAATTTGACATTCCGCTGTCCAAAAATGAAACTTATCCATGTTCTAAATGGTAATCCGGACATGCATTTCTTGTGTACTTTCAGGACACAATATGCTATA
CTAAAAGAAGAATGCCGCACAATGTTTCCAGTGATTGGAAGTGGTCGATATATTACTGCACCTGTAATAACAGAAGACGGTGATCCTATTCTAGATCCTT
TAGTACTTCAAGAGGCAAAAGCAGCAAAAGAAGCAAAAGAAGCTACTTCAGGCAGTCAAGGAAATGGTAATCATGACGATGTAGAGTTCTCAACTTGTGT
CCTCTCCATTCTCTTCTCTCTTTTTTCTTGTGTATGGCTGTCAGGTCGTTGAATGCTTCATGACGTAGAATTTAATCCTCTATTTTTCCATGCTGCAACA
GGTGCTTCC

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.961913
Expected error %
1.00859
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g27100.1 Score 68 E Value 3e-12 Identity 24.80% Align. Length 128bp (25.15%) Frame 1
68417.m03895 RabGAP/TBC domain-containing protein similar to GTPase activating protein [Yarrowia lipolytica] GI:2370595; contains Pfam profile PF00566: TBC domain
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g54780.1 Score 67 E Value 5e-12 Identity 24.00% Align. Length 128bp (25.15%) Frame 1
68418.m06824 RabGAP/TBC domain-containing protein contains similarity to SP|P09379 GTPase-activating protein GYP7 (Fragment) {Yarrowia lipolytica}; contains Pfam profile PF00566: TBC domain
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0155L18
Clone
Clone name
hba-155l18
LE_HBa0155L18
P155L18
Clone type
BAC
Contamination
none
Estimated length
133,430
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found