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Clone Read LE_HBa0155J06_SP6_200879

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0155J06_SP6_200879
Primer
SP6
ID from Seq. Facility
LE_HBa_155_J06-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
636 trimmed for vector and quality, 895 raw
Sequence
>LE_HBa0155J06_SP6_200879 (raw untrimmed)
ATTTTTTTTTTTATTTTTTTGGCAGTTTGATAGTTTAGAACTCACCCGCTATGGTTGCCACGTTTTCCAAGATCTCATTCAACCAGTTTCCACTTATAAC
ATGATTTGAAAGATCAGCATCAAGAAAAAACAACTGAAGCTCTATTGACAGACCAATATTTTGAGCAGACACATTATCAGGAAAGTTCTTGAGCTTTGTG
TTTCTGAGATACACCAACAGACTGTTGAGATGATGTGAAAATCCTTTTGGTAATTTCTTGTCCTTGAATGTTTTTGATTGGGTGAACTTTGAAGCCTTTA
ATTCACTAAGAAAAATCTTCTTCATTTCCTGCTCCACTAACACAATCAACCCTAATAGATAAGGAGGTTTATTCTCAACTATATCAACTATTTCATTGTC
ATCCTCATCCTCATCCTCATCCTCGAGTACAATAAATACAGTACATAATTGTCCTACATTATCAGCCAAGACCTGAATTCGGGTCTCCAGACCTTCCAAC
TTCTCATAGTCAATGTAACCATTTATTTCTGTGGCATATAAGTATCTCAAAAATCTCATTTTCTTGTGAATAATTTTTAGTTGCTTTATAAATAGAAACT
CTAACCTAGACCGACAAGATGAGTCATCCATAGGCTGTCCCACGAGAATCAGTACATCATTTATATTCTTTACGAGCCAATCCATACATTCTGAGAAATC
AAAATCATTCGACTCAGAATTGCAACTTAAACTGGGCGTATTTACCTTGAAAAAATTCGAAACAATGGGATACGAGCCCTTCCAGATTAAGGTTAGTTTT
ACATTCCTCTGTGATCCCATCAAAATTTCCTTGAGGGTTTTCACAAACAATTTTGTCCTCTTTTGGAATTTGACAATGTTTTCGGAAAAAAATAT
>LE_HBa0155J06_SP6_200879 (trimmed for quality and cloning vector)
ACCCGCTATGGTTGCCACGTTTTCCAAGATCTCATTCAACCAGTTTCCACTTATAACATGATTTGAAAGATCAGCATCAAGAAAAAACAACTGAAGCTCT
ATTGACAGACCAATATTTTGAGCAGACACATTATCAGGAAAGTTCTTGAGCTTTGTGTTTCTGAGATACACCAACAGACTGTTGAGATGATGTGAAAATC
CTTTTGGTAATTTCTTGTCCTTGAATGTTTTTGATTGGGTGAACTTTGAAGCCTTTAATTCACTAAGAAAAATCTTCTTCATTTCCTGCTCCACTAACAC
AATCAACCCTAATAGATAAGGAGGTTTATTCTCAACTATATCAACTATTTCATTGTCATCCTCATCCTCATCCTCATCCTCGAGTACAATAAATACAGTA
CATAATTGTCCTACATTATCAGCCAAGACCTGAATTCGGGTCTCCAGACCTTCCAACTTCTCATAGTCAATGTAACCATTTATTTCTGTGGCATATAAGT
ATCTCAAAAATCTCATTTTCTTGTGAATAATTTTTAGTTGCTTTATAAATAGAAACTCTAACCTAGACCGACAAGATGAGTCATCCATAGGCTGTCCCAC
GAGAATCAGTACATCATTTATATTCTTTACGAGCCA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.948918
Expected error %
0.417375
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAG31017.1| Score 345 E Value 5e-94 Identity 28.50% Align. Length 635bp (99.84%) Frame 2
tospovirus resistance protein E [Lycopersicon esculentum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAG31016.1| Score 331 E Value 8e-90 Identity 27.40% Align. Length 635bp (99.84%) Frame 2
tospovirus resistance protein D [Lycopersicon esculentum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0155J06
Clone
Clone name
hba-155j6
LE_HBa0155J06
P155J06
Clone type
BAC
Contamination
none
Estimated length
81,564
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found