Clone Read LE_HBa0079K08_SP6_20078

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0079K08_SP6_20078
Primer
SP6
ID from Seq. Facility
LE_HBa_079_K08-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
566 trimmed for vector and quality, 842 raw
Genbank Accession
DU037276
Sequence
>LE_HBa0079K08_SP6_20078 (raw untrimmed)
CTAAATGTCGACTNGANNCANNNGGNNAGTCNCCCGCGGATAAATTGCCTNGNGAATACCCTTCAGTTTACCTTTTCAGGGTCCTTCCTGGCAGCAGGGA
TATCGTAAGATTCCTCCTACACTCCTGCTGGTATAAGAATAATCAGAATGAAATAACTAACGTACATTGAAGTGTGAAAATTGTTTAGAAAGGAAGCGTC
GCCTCTGTCATGTTAAAACAGGATGTTTGATCTGCTTTTGGTCAGTCTTTAGGTTAGATTTCTGTTCTTGTCCCCTTCAATGAAAAAAGATGGAGATCAA
CAGAACAACTAGATGGCAAAGGCAATGAACTTTGGTCCCAGTTTGTGGTATGAGCCATAGTAAGAAGACAGCCTGAAGTAGCCACCTTGTACATATCCGT
ATAACTATAATGGAAATTTTGGAAGTTTCATAGAATCTTCTGTTTACAATGTGTTTAAGGCTTCTTAATATGGACTTACCTTCCGAATAAGAAAAAAATA
AAATAATATATATATATATATATATATATATATTACATAGAATGCTTATTCCAAAAAGCAATGATCGAGGAAGTTGTTTCCCTATAGTTAAATTGTCTCA
ACATAAAGTTGCCTTCCTGTGGTAGATAATATCTTATGCAGCTCTCAAAATTAGGTCTCCGATGGCATTCTCAAGTATGTTATGTGAATGGCATGTGAGA
CCATGATTTAATTGCAATCCTTCCCCCTTTTTCTGGGTCCACCTTTGGAGTTCCCATAACCTTGCTTACTTTTTTATTATGTTGCCCAACCTGCCGATCC
CCTATCGCCCCTGGAAGGCCCATAAATTTGACCAAATTTTTG
>LE_HBa0079K08_SP6_20078 (trimmed for quality and cloning vector)
ATACCCTTCAGTTTACCTTTTCAGGGTCCTTCCTGGCAGCAGGGATATCGTAAGATTCCTCCTACACTCCTGCTGGTATAAGAATAATCAGAATGAAATA
ACTAACGTACATTGAAGTGTGAAAATTGTTTAGAAAGGAAGCGTCGCCTCTGTCATGTTAAAACAGGATGTTTGATCTGCTTTTGGTCAGTCTTTAGGTT
AGATTTCTGTTCTTGTCCCCTTCAATGAAAAAAGATGGAGATCAACAGAACAACTAGATGGCAAAGGCAATGAACTTTGGTCCCAGTTTGTGGTATGAGC
CATAGTAAGAAGACAGCCTGAAGTAGCCACCTTGTACATATCCGTATAACTATAATGGAAATTTTGGAAGTTTCATAGAATCTTCTGTTTACAATGTGTT
TAAGGCTTCTTAATATGGACTTACCTTCCGAATAAGAAAAAAATAAAATAATATATATATATATATATATATATATATTACATAGAATGCTTATTCCAAA
AAGCAATGATCGAGGAAGTTGTTTCCCTATAGTTAAATTGTCTCAACATAAAGTTGCCTTCCTGTG

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.958793
Expected error %
0.422532
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0079K08
Clone
Clone name
hba-79k8
LE_HBa0079K08
C03HBa0079K08
P079K08
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found