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Clone Read LE_HBa0142K01_SP6_199909

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0142K01_SP6_199909
Primer
SP6
ID from Seq. Facility
LE_HBa_142_K01-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
61 trimmed for vector and quality, 940 raw
Sequence
>LE_HBa0142K01_SP6_199909 (raw untrimmed)
AGGGGGGGGAGAAAAACTAGGGGGTTATGCCGCAGATGTGTGAGGCAATAACAGGTCTGTGATGCCCTTACCTTTTAGGGGTNGNANNGTNGNTANANTT
ATTATTNAACGCCTTTAGAGGCGGGGCCAATTGGCCCGGGNAANCNNNGAAANNNCANCGNGANAGGGANANANCANNGCANTTTTTGGAGGGCAACGAG
GAANNCCNAGNAAGCGNGAGGCAGCAGCGCCGGGNGACNACGNCCCNGCCCNANGGACACACCGCCCGNCGCNCNNACCGANNGAANAANNNAGNGAAAN
GNNCGAANCGCGGCGACANGGGCAGNNNGCNGCCCGCGAAGNCGNGAGAAGNCCANNGAACCNNANCANNNAGAGGAAGGAGAAGNCGNAACAAGGGNNC
CANAGGNAAACCNGCGGAAGGANCANNGNCGAAACCNGNACAGCAGAGCGACCGGNGAACNCGNNNNAAACACCNGGGGGCGGCGCNCGCNCGNNGNGCG
CCNCCCGCCNGNCGCCCGACGCGCGCAAGCNCNNCGGGCGACCACNGAACCCCGGCACGAAAAGCGCCAAGGAANACNACAANCGACAGCCCGCCCCNCG
CGCCCGANNCACGGAACAAGGGGGGAAGCGCCCNGCCCCGAAAACAGAAACCACCCCCGACAAGGAAAAACCAGCCCCCGCCACGAGAAGAAGGAGCGAA
AAGCGAGGCCGGGGGGGAAAGGCCAAAACCCGGGACCAACGAGCGCACGAGCCAAGGCCCGCCCAAACCACAGGCCGAGGGAACGCCGCCGGGGGGCGCA
CCACGGCACGGGCCCCCGAGACCCGAGAACGGAAAAGCGGGAACGGAAGGGACACCCCACAAGCCAGGCCCAAGCGGAGACCAGGGCGGAAAGCAAGGGG
GGGCGAGCGAGAGCAGCACACGGACAGAAGGGCGCGCGCG
>LE_HBa0142K01_SP6_199909 (trimmed for quality and cloning vector)
CGCCCGACGCGCGCAAGCNCNNCGGGCGACCACNGAACCCCGGCACGAAAAGCGCCAAGGA

This is probably not a useful sequence.

Problems:
  • Low complexity
  • High predicted error rate
  • Short cloning insert
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.821479
Expected error %
11.5794
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0142K01
Clone
Clone name
hba-142k1
LE_HBa0142K01
C02HBa0142K01
P142K01
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found