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Clone Read LE_HBa0076K23_SP6_17804

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0076K23_SP6_17804
Primer
SP6
ID from Seq. Facility
LE_HBa_076_K23-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
1 trimmed for vector and quality, 1875 raw
Sequence
>LE_HBa0076K23_SP6_17804 (raw untrimmed)
ATGTGACGAATAGTGGTGGTAGAGTGCTTCTGGATATAGTGAAGCGCGTCTNTNTGTGCGTGTCGTCTTACGGTTGTGTCTGACNTACTANTATTGACCT
GTATNTCTATACTGTCTCCGCGATCACNCTAGGGACGAGCGGCACANACAAGCTCACACACCCATTATTATTGAGAAATGAGTGCAACTGCAAANACAGT
ATTCCACTTACACTGGGTAAATTGANTCAGTGTCAGGAGGGACGGGTGCACTCCTCTCTACNCGGTGCACCCTNTGTNATCGCGATGAGACCAACTNCAG
ATCTACGNCGTATTCTATGTGGTCTGANTGCCGTAGTNANGTGCGCGGGTGCGCACACCTCATAAGTGACTGAGCGAACTCNGTNCACGCGTGTTTGCTG
ATACGCCCATTCATTCTCGCTTGACATCATCACTTNCTACCACACCTCGCGTCAGCTATGCTACTCGCTCTCCGACTTCGCGGGATACGAATGTCCCACT
GAGTCACCATCCATACAATACCGCACCACGTGCTCGCGCGTGCCNGAAGTGGCGGTATCACTACGCATGCTGCAGTGTAGTAATGTGTTNTNANGCACTG
TCTGNGGTTATACGCGATGTATCTGACTGGCGCGTACTCACTTCTCATTGTCTCGACATNCGTGTATGTGTGAGCGCTCAGGTGCACACTGATGCCATGC
TCTATTCATCTTCTCTCCTTATTCGATCTCATGCGGATATGTAATCNATATTGACTTGTCTTNGNGCTTATAACTCTACTTCTTGATCAGAAAGTGCGCC
TCATGAACTAGCATGATATAGTGTCTGCATATCTGTGTGATGGTACGCACGTCATTGCTCGANACATAATATAGTGATGACATGCGAATAGTGGATACAC
GCAGTCGTGATACGCAACTCTGACGCTACCTAGTCATGCGAGGTATCATNATACTCTTCTTGTATTCTTTTGCGTCTACCGATTCTTACTAGGATGTGAG
CTATNAGAGATGTCGACTATATGCATTGTCCACNATCATATACTNCTACGATAACGTCATCGCACGCATAGACTCTCGACTGCNCATCTATCTTCGNGCA
TCGCCTCGCGNGATGAGTGCTACGTCTCTAGTGTCTCGCGCTAAGCTGCGTACTGGACTACTGACTTNCTGCACTTGTNATGTAACAGTGAGTGCNACAG
ACTGCTGCATGGATATTGGATTANGGACTACGCTATCTTAGCATGTGCGCGATCTAAACGTCACGTATCTCTGATGACATCTCTACACCTTCTCGCACTT
GCATACTGAAACGTGACCTGCAAACTATTACGACTCACCTCGAACATAACACATAGGCCTCTATCGCANGTCCANCGACGAATACACCACACTATGTATG
ACANCTCTGATACATGGTATTGAATACATTCTAANATACGTGATAAGAGTGTTCTGCACTCTATGCATCACTGACATTAGAACACCAAGACGCGCACTCG
ANTGTCTNCATNGATNCTCGCTCGCGTACGTNAACATCAGTATNGCCGACACACAGNGANGCCACCGCATACNTGTGCACTACTCTGCGCTANCATGTNA
GATGCATGTTNCNATGNTGCACACCGTGCGTNACTGACTNCGTGATNGTNCTATCTNTNACAGTATGTACTNAGAGCTAACAACGCNGACTGCAGCGCTG
TGNATTGTGCGACTNGCAGTNAGGCACTTACATAAATNANTAGCTTTNTACCTNCATGATCTGAATCACTCTGAGCACGTAGAGACCTGCAAGCGATAGC
ACTAGCTATGTANCTGCTNTGATACTCGTANCTATACACTCACTAGACATGTGATTTGCTTGTGATGTGCTCAGN
>LE_HBa0076K23_SP6_17804 (trimmed for quality and cloning vector)
A

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • High predicted error rate
  • Low complexity
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
100
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0076K23
Clone
Clone name
hba-76k23
LE_HBa0076K23
P076K23
Clone type
BAC
Contamination
none
Estimated length
91,529
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found