Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

Clone Read LE_HBa0076I13_T7_17689

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0076I13_T7_17689
Primer
T7
ID from Seq. Facility
LE_HBa_076_I13-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
317 trimmed for vector and quality, 874 raw
Genbank Accession
DU035393
Sequence
>LE_HBa0076I13_T7_17689 (raw untrimmed)
GATAGCCGGGGGGGGATCTCTCTAAAGTCGACCTGCAGGCATGCAAGCTTCGTTGATTTAGCTAGCTACTACCGTCGATTTGTCAAGGGATTTTCTTCCA
TTGCTTCCCAATTGACAAACTTGACTAAGCAGAGTGTTCCATTTGTATGATCGGACGAGTGTGAAGAAAGCTTTCAGAAGCTGAAGACCTTGTTGACTAC
TGCACCAATTCTTACCTTGCCAGTGGAAGGTAAGAATTTCATTGTTTACTATGATGCATCCTTTCTGGTTTGGGTGCTGTGCTAATGCAAGAGAAGAATG
TAATTGCTTATTCCTCGAGTCAATTAAGAGTGAATGAACGTAATTATCCGACCCACGATTTGGAGTTAGAAGCAGTAGTGTTTGCATTAAAGCAATGGAG
GCATTATCTATATGGGGTTAAGTGTGAAGTCTATATGGTTCATCGTAGTTTACAGTATGTTCTTTCTCGTAAAGATTTTGATTTTGAGACCTATGAGATG
GATGGCACTACTGAATGACTTTGATTATCACTATTTCTGTATCTTCCTGGAAATGCTCAATGTGGTGGTTGATGCCTTTAATTAGAAAGGCAGGTAACAT
GGTAAGCCTACCACCCTTTGCTGGTTCCCTAGACCCCCGCTGGTTCTCAGACGGTCCACACTATGTCTACATGATTTTTACTGAGGCTAGTAAGTAACAT
TGAGAAGGTTATGATTCATCTCCACGTGTGGAGGGCTATACTCTCCCTTTCGTTTTTCGAATCAGTGGGAAGTTATTCTACTCTTTCGTTAATTTTTTTT
AATATCCTTTAACTTTTGTTTTCTGGATGGACCTGGGTTTACTTTTTTCTTTTATTTGTTTATTTAATTGTCTT
>LE_HBa0076I13_T7_17689 (trimmed for quality and cloning vector)
GCAAGCTTCGTTGATTTAGCTAGCTACTACCGTCGATTTGTCAAGGGATTTTCTTCCATTGCTTCCCAATTGACAAACTTGACTAAGCAGAGTGTTCCAT
TTGTATGATCGGACGAGTGTGAAGAAAGCTTTCAGAAGCTGAAGACCTTGTTGACTACTGCACCAATTCTTACCTTGCCAGTGGAAGGTAAGAATTTCAT
TGTTTACTATGATGCATCCTTTCTGGTTTGGGTGCTGTGCTAATGCAAGAGAAGAATGTAATTGCTTATTCCTCGAGTCAATTAAGAGTGAATGAACGTA
ATTATCCGACCCACGAT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.971909
Expected error %
0.599129
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT66771.1| Score 73 E Value 5e-21 Identity 54.20% Align. Length 313bp (98.74%) Frame 2
putative polyprotein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38745.1| Score 70 E Value 7e-21 Identity 51.40% Align. Length 313bp (98.74%) Frame 2
putative polyprotein, 3'-partial [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0076I13
Clone
Clone name
hba-76i13
LE_HBa0076I13
C00HBa0076I13
P076I13
Clone type
BAC
Contamination
none
Estimated length
120,428
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found