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Clone Read LE_HBa0076D17_T7_17457

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0076D17_T7_17457
Primer
T7
ID from Seq. Facility
LE_HBa_076_D17-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
624 trimmed for vector and quality, 843 raw
Sequence
>LE_HBa0076D17_T7_17457 (raw untrimmed)
TTGGGACCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTACTTCAGGAATGGATGGCCACACACTTTGCTCAACTGTTTGTTCAACCATTTG
ACCTGCCATGACACATAAAATGAGACAAATTAACAATGACGTGATTACTGTATCATTTTATTTCTTTAAATTGCCTGAAGAAATAATGTTTGCGAAAACA
CCAGAAATGTATAACCACTAAGATTTACAACTGACATTGATAAGATATGGAGATTACTGTTTATCAACTCACTTTTGATCCCTTTTCTTGTAAACAATCG
CAATTTTTCTGAATTATTAACCATTTTACCATTAAATTACCCATTTCTTTGTTACATTGTATTGTTACTCCATATTTGAGGGTAATATACTTTAAATAAC
AGTTTAAATATAACGCATCTCCTATATGTTATACACTCCACTTGTAGGATTCAAATTGGGTATGTTGTTGTTGTAACTAAAACTGATCTTCGCAGTCTTC
AATCTTCGATAAAAAAACATTAGTTGTAACTAGATCACTAAAGTTGCCTTTTAGCTTTAAGAAGAAGGAATTAAGTGAATCTTTGTTCCTATCACAACGA
TAAGCCTAACAGGCCCGTTGAACAATATTGCATCTCTTCTAACACAGGTGAGATTTTTTCTGTTTGACAAAGAAGTTTTAGACTACATATCACACACATA
TAAACATACATTTCATATTCAATTGTGAACGGCCTCAAATTCTTCGAGCACCTCTCCCCAAACCACGTTATCAACTTTTTTCACCTCTTTTCTCCCTTTT
ATTCTGTTTTTCGGTTCTTAGTCACTCTAGCCAGCTTTCCGTT
>LE_HBa0076D17_T7_17457 (trimmed for quality and cloning vector)
AGCTTACTTCAGGAATGGATGGCCACACACTTTGCTCAACTGTTTGTTCAACCATTTGACCTGCCATGACACATAAAATGAGACAAATTAACAATGACGT
GATTACTGTATCATTTTATTTCTTTAAATTGCCTGAAGAAATAATGTTTGCGAAAACACCAGAAATGTATAACCACTAAGATTTACAACTGACATTGATA
AGATATGGAGATTACTGTTTATCAACTCACTTTTGATCCCTTTTCTTGTAAACAATCGCAATTTTTCTGAATTATTAACCATTTTACCATTAAATTACCC
ATTTCTTTGTTACATTGTATTGTTACTCCATATTTGAGGGTAATATACTTTAAATAACAGTTTAAATATAACGCATCTCCTATATGTTATACACTCCACT
TGTAGGATTCAAATTGGGTATGTTGTTGTTGTAACTAAAACTGATCTTCGCAGTCTTCAATCTTCGATAAAAAAACATTAGTTGTAACTAGATCACTAAA
GTTGCCTTTTAGCTTTAAGAAGAAGGAATTAAGTGAATCTTTGTTCCTATCACAACGATAAGCCTAACAGGCCCGTTGAACAATATTGCATCTCTTCTAA
CACAGGTGAGATTTTTTCTGTTTG

This is probably not a useful sequence.

Problems:
  • High predicted error rate
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.940816
Expected error %
3.7303
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0076D17
Clone
Clone name
hba-76d17
LE_HBa0076D17
P076D17
Clone type
BAC
Contamination
none
Estimated length
85,019
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found