Clone Read LE_HBa0073E05_SP6_16712

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0073E05_SP6_16712
Primer
SP6
ID from Seq. Facility
LE_HBa_073_E05-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 724 raw
Sequence
>LE_HBa0073E05_SP6_16712 (raw untrimmed)
TCCTACATATAAAGGGGGGGCCCCCCCAACGAACGCCCCCCCCCACATCCCCACGTCGACCCTTCATACCCTAGATCCAATCGTAGGAAAACAAAAGAGA
AGACAACCAGCGCAGTCAAGAAATATAATATATAGACGCGATGCAACGGATACATACAACTTGAAACTATTTGGTTATTGTCCGTGTTTCTGGTATACCC
TACTCAAGTGTCCCTCTCGACTCACTGTATATATCACGGCATGGCCTGCCCCCGGGGGGTGAACAGTGTCCCATCCCTTCTTTCCCTCCTTTCTTTCCCC
TCCCACACTCTCTCCCCGCCCCGCTTGCCTCCATCATTCCCCGCTGTGATCATCTTAACTTTTTCTTTTCCTCTTGTGTACGTTTCTGTTTGTGTAATAT
CTTCTTTTATGCCGGTTTTAGCTAATTGTTACCATATCGTAGATTACTTCTGCATGAGCTGATGGATTGCTTCAGTTTCACGATTTTCCCCGACTCATTC
TTTACTTCTTTCTATTTCGTGACGTTTACATGACCTACGTCTATGCATGCTACTGATAATTACATTCTCGTTTTGTACAATTCCCATTCTCCCTCCGCTT
ATCCTTTCTACTATCTCCGCCCACTCTTCGTAGCCCTCACTTACCCTCACACACATTCCCAACTTCCCCACAAAAAACTCCACGATTCCCACTCCTCCCG
CCACCCACCCACCTCCCACACTCA
>LE_HBa0073E05_SP6_16712 (trimmed for quality and cloning vector)
TT

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
  • High predicted error rate
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
6.61011
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0073E05
Clone
Clone name
hba-73e5
LE_HBa0073E05
P073E05
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found