Clone Read LE_HBa0073A07_SP6_16524

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0073A07_SP6_16524
Primer
SP6
ID from Seq. Facility
LE_HBa_073_A07-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
1 trimmed for vector and quality, 938 raw
Sequence
>LE_HBa0073A07_SP6_16524 (raw untrimmed)
CTCTTGTTTGCATAAAGAGGGAGGCGTACCCCCTCTCTCCCTGGAGGCTGAGGGCTCTCATGTATCTGTGACTTGCGAAGTGCCCTGACGAAAGGCTGGG
ATCGGGGATTTGTCTAGGGTGCTAAAATGTGATTGGTTTTTATATAGGTCATGTGGTTGTTATCTTTTGTTTTGTTGTGTCTTCGAGTTTAGTCTGGTGC
GTACAAGTTAGGATANGAAGTCGTTTGCCCGGGCTATGACGATTTCGCAAGATGAACTCCACTGGACGTTCAATTACATCTCTGATACCACATCTAACTC
GCGACGATACGTGAACAATCGCACACCTAATAACACCACTACCAAGGAGGAGGTCGAGAGAGNTTACANTATCACTGTCTGTCGTTGTTATAATTATAAT
CAATCTCCTGCTCGATTCTTCTCTCTTTCTTCTTCTCTTTTCTTTGTTGCAGTGTGCCCTTTCCGGGGCGCGGCCANAGCTTCGCTCTTGTATCTGTACC
CTCCTCCTTATGTTCAATAGCACGCCAATACATATATTATGTGCGCGCTGTCGAGTGTTCGTGGTCCGTATGTTTGTATTTCTCTACTGTCTTTTCTCTC
AATACTTTATAAACTTCTACGAGACTAGTGCATCACTACTCTAACTTCCTCCCTGTACCTCCTACTCACACACCTCGTTAGCCTCTTCGCGCTCGCGCCC
GTCACGTCTTCCCATCGTCTCTTATCATCCCCTCATACCATTGTCTATTGACACCATACGTCACCCGCTTAGCAATAACCCGATACATCATGATTCTGGG
TTTCCTCTAATCGCTTTATCCTATCTTTCTTTCTACCATTTCTCCTCTACTGTCTCTTCGTCTGCAGATGTCGTCGACTGTCCACACACATCGAGCGGAC
CGCAACGCGGCACGATCTCTGACGCAGGCGGGAGGGCC
>LE_HBa0073A07_SP6_16524 (trimmed for quality and cloning vector)
C

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • High predicted error rate
  • Low complexity
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
100
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0073A07
Clone
Clone name
hba-73a7
LE_HBa0073A07
P073A07
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found