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Clone Read LE_HBa0170O04_T7_14887

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0170O04_T7_14887
Primer
T7
ID from Seq. Facility
LE_HBa_170_O04-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
717 trimmed for vector and quality, 761 raw
Genbank Accession
DU033153
Sequence
>LE_HBa0170O04_T7_14887 (raw untrimmed)
AGCTGGGTCCCGGAGGACCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGGGAACGGTTCGCCAACACTCATTAAAGTTCTTGAGAATAAAATGGACAAG
CTTACGATCTCCTTTAAGAGTCCATGGACCTCTCTTCAATCCAACTCTATCACAACAAGGTTGCCTTCCCATTTTTATTTTGCACAGTTGGAGAAGCTAG
CTAAAACTAGTAAAGAGAGGAAGAAGGACACATATATAATATGTAATATAATACTAACTAATTATTAGAGTAGTAGACAATCATTTCTCTAAGGAAAAAA
GAAGTTTATATTCGAAGCAAAGAAAAGATGCGTACAGATCAGCAAAGGGACATATAACAAAAAAGATGTGCTGCTTAACAAGGGAAATGCATGATTGAAT
AGGGAAAAAATAATTTGTAAAGGTGATGCGCATGGAATATGTGTTACATATATTAATAAAAAGTGGGAAGCCACCATCACAATCAAACTTTGCTATGGCA
GCTTCTTACCTAATCATACATATACTTAACTAGTATTATATTTTATATTTTCATAAAAGTCATCCTCTCTTTGTGCTTTTTCCTTTGGAACTCTTGTATG
GTTAGGTTCAAAGTAAAGGAAAACTTAATCTTACGCATAACTAATACTATCATAGTATTTCGTTTTGGCATAGTCAATTGCCCCTTTTCTAGCTAATCGA
TAGGAAAATCCTTACACAAGCCTTACTAACGAAAGTTTAATTGATATCGATAAGTAAGTGG
>LE_HBa0170O04_T7_14887 (trimmed for quality and cloning vector)
AGCTTGGGAACGGTTCGCCAACACTCATTAAAGTTCTTGAGAATAAAATGGACAAGCTTACGATCTCCTTTAAGAGTCCATGGACCTCTCTTCAATCCAA
CTCTATCACAACAAGGTTGCCTTCCCATTTTTATTTTGCACAGTTGGAGAAGCTAGCTAAAACTAGTAAAGAGAGGAAGAAGGACACATATATAATATGT
AATATAATACTAACTAATTATTAGAGTAGTAGACAATCATTTCTCTAAGGAAAAAAGAAGTTTATATTCGAAGCAAAGAAAAGATGCGTACAGATCAGCA
AAGGGACATATAACAAAAAAGATGTGCTGCTTAACAAGGGAAATGCATGATTGAATAGGGAAAAAATAATTTGTAAAGGTGATGCGCATGGAATATGTGT
TACATATATTAATAAAAAGTGGGAAGCCACCATCACAATCAAACTTTGCTATGGCAGCTTCTTACCTAATCATACATATACTTAACTAGTATTATATTTT
ATATTTTCATAAAAGTCATCCTCTCTTTGTGCTTTTTCCTTTGGAACTCTTGTATGGTTAGGTTCAAAGTAAAGGAAAACTTAATCTTACGCATAACTAA
TACTATCATAGTATTTCGTTTTGGCATAGTCAATTGCCCCTTTTCTAGCTAATCGATAGGAAAATCCTTACACAAGCCTTACTAACGAAAGTTTAATTGA
TATCGATAAGTAAGTGG

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.950017
Expected error %
0.690909
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g66230.1 Score 74 E Value 1e-13 Identity 23.80% Align. Length 125bp (17.43%) Frame 1
68414.m07517 myb family transcription factor (MYB20) similar to myb-related transcription factor GI:1430846 from [Lycopersicon esculentum]; contains PFAM profile: Myb DNA binding domain PF00249
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g16600.1 Score 73 E Value 2e-13 Identity 22.20% Align. Length 125bp (17.43%) Frame 1
68418.m01943 myb family transcription factor (MYB43) contains PFAM profile: myb DNA binding domain PF00249
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAC83591.1| Score 74 E Value 5e-12 Identity 23.80% Align. Length 125bp (17.43%) Frame 1
putative transcription factor [Arabidopsis thaliana] pir||T51641 myb-related transcription factor MYB20 [imported] - Arabidopsis thaliana
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_176797.1| Score 74 E Value 5e-12 Identity 23.80% Align. Length 125bp (17.43%) Frame 1
myb family transcription factor (MYB20) [Arabidopsis thaliana] gb|AAG51765.1| myb-related transcription factor, putative; 17635-18559 [Arabidopsis thaliana] gb|AAS10035.1| MYB transcription factor [Arabidopsis thaliana] pir||C96687 hypothetical protein T6J19.5 [imported] - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0170O04
Clone
Clone name
hba-170o4
LE_HBa0170O04
C02HBa0170O04
P170O04
Clone type
BAC
Contamination
none
Estimated length
93,359
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found