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Clone Read LE_HBa0044H23_SP6_142833

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0044H23_SP6_142833
Primer
SP6
ID from Seq. Facility
LE_HBa_044_H23-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
593 trimmed for vector and quality, 800 raw
Genbank Accession
DU043159
Sequence
>LE_HBa0044H23_SP6_142833 (raw untrimmed)
GTTGGGGAAAAATCCCTTCCAGGTACGATCTATACCCCTACTTCAAATTCAAGATCTCTTCTTCTATTGTCGGCATTGGATTTTCGTCAACTATAGGTGT
TTTCAACCTATACCTTTTCATATGAACATTCTCTAAGGCCTCACAGATCATCTTGGGACCAAGGAGTGAAGACTCTCCTACCTCAAAACACACAATAAGA
GACCGACACCTCCTAACATAGAGTGCTTCAAAAGGGGCCATGGAAATACTCGAATGGTAGCTATTTATTATAAGAGAACTCAATAACCGGTAGGTGATCA
TCCCAACTTCCTTTGAAATCAATAACACAAACTCTTAGCTATATTCTAGAGTTTGAATGATACGCTCTGCTTGACCATCCGCTTGAGGATGAAAAGCGGT
GCTAAGTTTCACGTGAGTACCTAACCCCTTTTGAAAAGATCTCCAAAAACAAGAAGTGAATTGGGCACCCCTATCGAAATGATGCACAAAGGGATACCAT
GCAAACTCACAATCTCATCAAGGTATGACCTTGCCATACTCTTCCGCCAAATAAGTAGACTTAACGGGGATAAATTGAGAGGATTTCATCAACCTATCCA
TAATAACCCATATTGAGTCATTTTGCCTATGTATCTGAGGCAAACCCACAACGGAGTCCACATTAATGTCTTCCCACTTCCTAGTTGGAACATTTATTAC
TTGAGGCAAACCACTCGACTTTTTGAATGTTCCTTGCATTTTCCTTGTTGACAATTTGGGGCACCTAGCCACAAAATTCCTGCCCCCTACCTTTTTTTAA
>LE_HBa0044H23_SP6_142833 (trimmed for quality and cloning vector)
CCCCTACTTCAAATTCAAGATCTCTTCTTCTATTGTCGGCATTGGATTTTCGTCAACTATAGGTGTTTTCAACCTATACCTTTTCATATGAACATTCTCT
AAGGCCTCACAGATCATCTTGGGACCAAGGAGTGAAGACTCTCCTACCTCAAAACACACAATAAGAGACCGACACCTCCTAACATAGAGTGCTTCAAAAG
GGGCCATGGAAATACTCGAATGGTAGCTATTTATTATAAGAGAACTCAATAACCGGTAGGTGATCATCCCAACTTCCTTTGAAATCAATAACACAAACTC
TTAGCTATATTCTAGAGTTTGAATGATACGCTCTGCTTGACCATCCGCTTGAGGATGAAAAGCGGTGCTAAGTTTCACGTGAGTACCTAACCCCTTTTGA
AAAGATCTCCAAAAACAAGAAGTGAATTGGGCACCCCTATCGAAATGATGCACAAAGGGATACCATGCAAACTCACAATCTCATCAAGGTATGACCTTGC
CATACTCTTCCGCCAAATAAGTAGACTTAACGGGGATAAATTGAGAGGATTTCATCAACCTATCCATAATAACCCATATTGAGTCATTTTGCC

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.965619
Expected error %
0.3068
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38724.1| Score 171 E Value 1e-41 Identity 17.80% Align. Length 527bp (88.87%) Frame 2
putative retrotransposon protein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38744.1| Score 169 E Value 3e-41 Identity 17.60% Align. Length 527bp (88.87%) Frame 2
putative gag-pol polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0044H23
Clone
Clone name
hba-44h23
LE_HBa0044H23
P044H23
Clone type
BAC
Contamination
none
Estimated length
87,752
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found