Clone Read LE_HBa0035F01_T7_141158

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0035F01_T7_141158
Primer
T7
ID from Seq. Facility
LE_HBa_035_F01-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
414 trimmed for vector and quality, 918 raw
Genbank Accession
DU043668
Sequence
>LE_HBa0035F01_T7_141158 (raw untrimmed)
TCAGCCTGGGTCCGGGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTCTAGACGCCCATTGGCTAGAGAAGTTCAGCTTCTGGCTAACGACCTT
ATGAGATTAGAGGTAAATGAGAAGGGAGGATTGTTGGCTTGTGTGGAGGCAAGATCATCCTTCCTTGACAAGATTAAGGGAAAGCAGTTTAATGATGAGA
AATTAATCTGGATCCGAGATAAAGTGTTGAGAGGAGAGGCTAAGGAAGCACAATTCGATGAGGAAGGTGTTTTGAGAATCAAGGGAAGGGTATGTGTACC
CCGAGTTGACGATTTGATCAATACTATTCTGACAGAGGCTCATAGTTCAAGGTATTCTATATATCCTGGTGCAACCAAGATGTACCGTGACCTAATCAAC
ACTTTTGGTAGAGTAGAATGAAGCTTGATATTGTTGACTTTATTGTCCAAATGTCCAAACTGTCAACAATTATTATATGAACACTACAGGCTCAGAGGAA
CACTTTCACACAATGTCTTCTCCTCAATGGATCTGGGACAAGGATTGCATTGGTTTTCCTGGGTGGTCTCTCAAAGACATTGGTTTATTTTTATTTTTTT
TTGGTCGATTGTTTATTCGTCTTACTAACCCTTCCCATTCCATCCGCGGATCCTGAGACCTCCCTTCTCTCACCATTTTTATCATTTCTCCCCTCTTCTT
CTATCTTTTTTCTTGTACCTCTGTTCCATTCTGCCCTCCTGTTGCTTCTTTCTTTTTTTTTCTTCTTCTCTTTTTTCTTTTTTCTTTTTCTTCCTTTATT
CCATCTCATTCTCTTCATACACTCTTTATTCTCCTTTCCTCACTTATTCCATTGTCTTCTTATTCTTTTTTTTTTCTTCCCTTTTTTTTATTTTTCTCTT
TTTATTCCTTTTTTTTTA
>LE_HBa0035F01_T7_141158 (trimmed for quality and cloning vector)
AGCTTCTAGACGCCCATTGGCTAGAGAAGTTCAGCTTCTGGCTAACGACCTTATGAGATTAGAGGTAAATGAGAAGGGAGGATTGTTGGCTTGTGTGGAG
GCAAGATCATCCTTCCTTGACAAGATTAAGGGAAAGCAGTTTAATGATGAGAAATTAATCTGGATCCGAGATAAAGTGTTGAGAGGAGAGGCTAAGGAAG
CACAATTCGATGAGGAAGGTGTTTTGAGAATCAAGGGAAGGGTATGTGTACCCCGAGTTGACGATTTGATCAATACTATTCTGACAGAGGCTCATAGTTC
AAGGTATTCTATATATCCTGGTGCAACCAAGATGTACCGTGACCTAATCAACACTTTTGGTAGAGTAGAATGAAGCTTGATATTGTTGACTTTATTGTCC
AAATGTCCAAACTG

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.953863
Expected error %
1.0547
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38745.1| Score 128 E Value 2e-30 Identity 54.50% Align. Length 385bp (93.00%) Frame 3
putative polyprotein, 3'-partial [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT66771.1| Score 125 E Value 1e-29 Identity 52.70% Align. Length 385bp (93.00%) Frame 3
putative polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0035F01
Clone
Clone name
hba-35f1
LE_HBa0035F01
P035F01
Clone type
BAC
Contamination
none
Estimated length
111,333
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found